RLG00000008425
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001787
Physical Location & Seq
Forward (+)
30354815 .. 30356395
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008425

Sequence Viewer

Length: 543 bp
ATGGCAACGAACAAGGTTGAATCAAGTGAAGGGAGCTTTTCTAGGGGATCACACAATGGTGAACAACTGCCAGCTGAAAGGCCGAGACCTACTGGCCAGTTAACTGCTATGGTTAAACCTTATGTTCGCTCCGCACTTCCTCGGTTTCGCTGGACACCTCATCTGCACCGCTGTTTTGTGCATGCAGTTGATATCCTTGGAGGAGAAGACAGAGCCACTCCAAAGAAGATCTTGAGGATCATGAATGTTGAAGGTCTCACCATGAATCATGTAAAAAGCCATCTTCAGAAGTACAGAAACATGAAACATGAAGAACTCATACAAGTTAATGAGAAATCCCATGATGAGAAAGACGAACATCAAAGCGATAACAATGATGATAAAAAAACTAGGGCTAATAGTAGAGGAGCTATTGATGTCACGATGCTTCCATCACTCAACTCATCATCATCAAATGCTTCTTATTCCCAGAGATTTACGCTAAGCGAAGCTGGGAGTAGTTGTAATGTGAATGATGTCTCTCTTGAACTCACTCTTGGTTAA

Protein Analysis

181

Amino Acids

20.17

Weight (kDa)

8.57

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 50 - 99 1.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 132, 169
AclWI GGATC 2 cut(s) 55, 245
AcoI YGGCCR 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 1 cut(s) 293
AgsI TTSAA 3 cut(s) 20, 251, 527
AjuI GAANNNNNNNTTGG 1 cut(s) 519
AleI CACNNNNGTG 1 cut(s) 57
AluBI AGCT 4 cut(s) 36, 74, 410, 491
AluI AGCT 4 cut(s) 36, 74, 410, 491
Alw26I GTCTC 3 cut(s) 79, 260, 523
AlwI GGATC 2 cut(s) 55, 245
AoxI GGCC 2 cut(s) 80, 94
AsuHPI GGTGA 2 cut(s) 71, 250
BalI TGGCCA 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BbsI GAAGAC 1 cut(s) 213
BccI CCATC 2 cut(s) 288, 439
BcoDI GTCTC 3 cut(s) 79, 260, 523
BfaI CTAG 2 cut(s) 42, 390
BglII AGATCT 1 cut(s) 228
BlpI GCTNAGC 1 cut(s) 482
BmsI GCATC 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 253
BsaI GGTCTC 2 cut(s) 79, 260
BsaJI CCNNGG 2 cut(s) 140, 196
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bse1I ACTGG 2 cut(s) 97, 97
BseDI CCNNGG 2 cut(s) 140, 196
BseNI ACTGG 2 cut(s) 97, 97
BseRI GAGGAG 2 cut(s) 216, 420
BseYI CCCAGC 1 cut(s) 491
BsgI GTGCAG 1 cut(s) 149
BshFI GGCC 2 cut(s) 82, 96
BsmAI GTCTC 3 cut(s) 79, 260, 523
BsnI GGCC 2 cut(s) 82, 96
Bso31I GGTCTC 2 cut(s) 79, 260
Bsp143I GATC 3 cut(s) 47, 228, 237
Bsp1720I GCTNAGC 1 cut(s) 482
BspACI CCGC 2 cut(s) 132, 169
BspANI GGCC 2 cut(s) 82, 96
BspHI TCATGA 1 cut(s) 240
BspPI GGATC 2 cut(s) 55, 245
BspTNI GGTCTC 2 cut(s) 79, 260
BsrI ACTGG 2 cut(s) 97, 97
BssECI CCNNGG 2 cut(s) 140, 196
BssMI GATC 3 cut(s) 47, 228, 237
BssT1I CCWWGG 1 cut(s) 196
BstC8I GCNNGC 2 cut(s) 72, 183
BstDEI CTNAG 1 cut(s) 482
BstKTI GATC 3 cut(s) 50, 231, 240
BstMAI GTCTC 3 cut(s) 79, 260, 523
BstMBI GATC 3 cut(s) 47, 228, 237
BstNSI RCATGY 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BsuRI GGCC 2 cut(s) 82, 96
Cac8I GCNNGC 2 cut(s) 72, 183
CciI TCATGA 1 cut(s) 240
Csp6I GTAC 1 cut(s) 292
CviAII CATG 7 cut(s) 182, 241, 262, 269, 301, 308, 341
CviJI RGCY 9 cut(s) 36, 74, 82, 96, 215, 279, 395, 410, 491
CviKI_1 RGCY 9 cut(s) 36, 74, 82, 96, 215, 279, 395, 410, 491
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 482
DpnI GATC 3 cut(s) 49, 230, 239
DpnII GATC 3 cut(s) 47, 228, 237
EaeI YGGCCR 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 196
Eco31I GGTCTC 2 cut(s) 79, 260
Eco32I GATATC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 269
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 7 cut(s) 185, 244, 265, 272, 304, 311, 344
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 7 cut(s) 181, 240, 261, 268, 300, 307, 340
FspBI CTAG 2 cut(s) 42, 390
GsaI CCCAGC 1 cut(s) 495
HaeIII GGCC 2 cut(s) 82, 96
Hin1II CATG 7 cut(s) 185, 244, 265, 272, 304, 311, 344
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 2 cut(s) 20, 265
HpaI GTTAAC 1 cut(s) 102
HphI GGTGA 2 cut(s) 71, 250
Hpy166II GTNNAC 2 cut(s) 62, 102
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 4 cut(s) 232, 241, 421, 524
Hpy8I GTNNAC 2 cut(s) 62, 102
HpyAV CCTTC 2 cut(s) 23, 245
HpyCH4V TGCA 3 cut(s) 166, 181, 185
HpyF3I CTNAG 1 cut(s) 482
Hsp92II CATG 7 cut(s) 185, 244, 265, 272, 304, 311, 344
KspAI GTTAAC 1 cut(s) 102
Kzo9I GATC 3 cut(s) 47, 228, 237
LmnI GCTCC 3 cut(s) 33, 134, 407
LpnPI CCDG 6 cut(s) 78, 84, 110, 136, 477, 482
LweI GCATC 1 cut(s) 414
MaeI CTAG 2 cut(s) 42, 390
MaeIII GTNAC 1 cut(s) 418
MalI GATC 3 cut(s) 49, 230, 239
MboI GATC 3 cut(s) 47, 228, 237
MboII GAAGA 4 cut(s) 218, 238, 275, 323
MflI RGATCY 1 cut(s) 228
MlsI TGGCCA 1 cut(s) 96
MluNI TGGCCA 1 cut(s) 96
MnlI CCTC 5 cut(s) 150, 168, 194, 228, 398
Mox20I TGGCCA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 96
MseI TTAA 4 cut(s) 101, 114, 327, 541
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 96
MspA1I CMGCKG 2 cut(s) 74, 171
NdeII GATC 3 cut(s) 47, 228, 237
NlaIII CATG 7 cut(s) 185, 244, 265, 272, 304, 311, 344
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 418
NspI RCATGY 1 cut(s) 185
OliI CACNNNNGTG 1 cut(s) 57
PaeI GCATGC 1 cut(s) 185
PagI TCATGA 1 cut(s) 240
PfeI GAWTC 2 cut(s) 20, 265
PspFI CCCAGC 1 cut(s) 491
PsuI RGATCY 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 4 cut(s) 101, 114, 327, 541
Sau3AI GATC 3 cut(s) 47, 228, 237
SetI ASST 9 cut(s) 18, 38, 76, 91, 121, 160, 256, 412, 493
SfaNI GCATC 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SphI GCATGC 1 cut(s) 185
SsiI CCGC 2 cut(s) 132, 169
SspMI CTAG 2 cut(s) 42, 390
StyI CCWWGG 1 cut(s) 196
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 2 cut(s) 20, 265
Tru1I TTAA 4 cut(s) 101, 114, 327, 541
Tru9I TTAA 4 cut(s) 101, 114, 327, 541
TseFI GTSAC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 4 cut(s) 257, 278, 317, 324
XceI RCATGY 1 cut(s) 185
XspI CTAG 2 cut(s) 42, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.