Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011056.1

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Reverse (-)

8610 .. 10338

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011056.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggcaacaaacagggttgaattaggtgaagggagctctcttaggggatcaaacaggggtgaacaattacaattacaaagcactccacatttctcatcctatgagaatcaagaaaggaaaactgaacctcagcataagggagttcgccgtgtgaatttgcatgctgaaaggatgatcatgccgagacctactggacagttagctgctatggttagaccttatgttcgctctaaagtgcctcggattcactggacacctgatctccaccgctgttttgtgcatgcagttgatatccttggaggagcagacaaagcagcagctgcaagagcggaggtgaatgagaaggggaagcactcctcccattcaaatgactcgtacctaactgaatcaatcaattgctccgctactccaccctggaaagatgagaagaaaacgaaatcttacctcatccttacagatctatttcagggattaaccaataatactcgagtaaaagaaagcaatgatgatgaagggactgatgctaatattcgaggagctattgatgccacaatgcctcagacactaaactcatcatcaaatgctgggagtagttctaatgtaaatgatgtctcccttgaactcactcttggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

211

Amino Acids

23.25

Weight (kDa)

7.85

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	329
AciI	CCGC	3 cut(s)	268, 329, 402
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	20, 366, 620
AjnI	CCWGG	1 cut(s)	413
AjuI	GAANNNNNNNTTGG	1 cut(s)	612
AluBI	AGCT	4 cut(s)	36, 203, 320, 539
AluI	AGCT	4 cut(s)	36, 203, 320, 539
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	178, 616
AlwI	GGATC	1 cut(s)	55
AlwNI	CAGNNNCTG	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	486
ApeKI	GCWGC	4 cut(s)	203, 314, 317, 320
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
AsuHPI	GGTGA	3 cut(s)	38, 71, 346
AvaI	CYCGRG	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	190, 307, 326, 329
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	415
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	178, 616
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	4 cut(s)	204, 315, 318, 321
BlsI	GCNGC	4 cut(s)	205, 316, 319, 322
Bme1390I	CCNGG	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	2 cut(s)	511, 535
Bpu10I	CCTNAGC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	3 cut(s)	239, 295, 413
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bse1I	ACTGG	2 cut(s)	196, 254
Bse3DI	GCAATG	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	239, 295, 413
BseGI	GGATG	3 cut(s)	95, 177, 447
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	2 cut(s)	143, 572
BseNI	ACTGG	2 cut(s)	196, 254
BseRI	GAGGAG	3 cut(s)	315, 346, 549
BseXI	GCAGC	4 cut(s)	190, 307, 326, 329
BseYI	CCCAGC	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	529
BsmAI	GTCTC	2 cut(s)	178, 616
BsmFI	GGGAC	1 cut(s)	529
Bso31I	GGTCTC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	4 cut(s)	47, 174, 259, 457
BspACI	CCGC	3 cut(s)	268, 329, 402
BspCNI	CTCAG	2 cut(s)	142, 571
BspPI	GGATC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	508
BsrI	ACTGG	2 cut(s)	196, 254
BssECI	CCNNGG	3 cut(s)	239, 295, 413
BssMI	GATC	4 cut(s)	47, 174, 259, 457
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	162, 282
BstDEI	CTNAG	3 cut(s)	41, 129, 558
BstF5I	GGATG	3 cut(s)	95, 177, 447
BstKTI	GATC	4 cut(s)	50, 177, 262, 460
BstMAI	GTCTC	2 cut(s)	178, 616
BstMBI	GATC	4 cut(s)	47, 174, 259, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 320, 326, 545
BstNI	CCWGG	1 cut(s)	415
BstNSI	RCATGY	2 cut(s)	164, 284
BstSCI	CCNGG	1 cut(s)	413
BstV1I	GCAGC	4 cut(s)	190, 307, 326, 329
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	95, 177, 447
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	162, 282
CaiI	CAGNNNCTG	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	3 cut(s)	161, 178, 281
CviJI	RGCY	4 cut(s)	36, 203, 320, 539
CviKI_1	RGCY	4 cut(s)	36, 203, 320, 539
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	3 cut(s)	41, 129, 558
DpnI	GATC	4 cut(s)	49, 176, 261, 459
DpnII	GATC	4 cut(s)	47, 174, 259, 457
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	486
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	413
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	3 cut(s)	164, 181, 284
FaiI	YATR	7 cut(s)	102, 135, 162, 179, 209, 222, 282
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	3 cut(s)	160, 177, 280
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	204, 315, 318, 321
FokI	GGATG	3 cut(s)	82, 184, 434
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	4 cut(s)	204, 315, 318, 321
GluI	GCNGC	4 cut(s)	204, 315, 318, 321
GsaI	CCCAGC	1 cut(s)	588
Hin1II	CATG	3 cut(s)	164, 181, 284
HinfI	GANTC	4 cut(s)	106, 244, 371, 386
HphI	GGTGA	3 cut(s)	38, 71, 346
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	243, 561
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	23, 337, 506
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	4 cut(s)	160, 280, 284, 323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 320, 326, 545
HpyF3I	CTNAG	3 cut(s)	41, 129, 558
Hsp92II	CATG	3 cut(s)	164, 181, 284
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	47, 174, 259, 457
LmnI	GCTCC	4 cut(s)	33, 302, 404, 536
LpnPI	CCDG	8 cut(s)	40, 177, 235, 270, 400, 427, 452, 570
Lsp1109I	GCAGC	4 cut(s)	190, 307, 326, 329
LweI	GCATC	2 cut(s)	511, 535
MalI	GATC	4 cut(s)	49, 176, 261, 459
MbiI	CCGCTC	1 cut(s)	329
MboI	GATC	4 cut(s)	47, 174, 259, 457
MboII	GAAGA	1 cut(s)	439
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	5 cut(s)	20, 65, 71, 154, 394
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	8 cut(s)	138, 249, 293, 325, 367, 455, 527, 567
MseI	TTAA	2 cut(s)	473, 634
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	2 cut(s)	270, 320
MspR9I	CCNGG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	4 cut(s)	311, 320, 326, 545
NdeII	GATC	4 cut(s)	47, 174, 259, 457
NlaIII	CATG	3 cut(s)	164, 181, 284
NmeAIII	GCCGAG	1 cut(s)	207
NspI	RCATGY	2 cut(s)	164, 284
PaeI	GCATGC	2 cut(s)	164, 284
PaeR7I	CTCGAG	1 cut(s)	486
PfeI	GAWTC	3 cut(s)	106, 244, 386
PkrI	GCNGC	4 cut(s)	205, 316, 319, 322
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	413
PspXI	VCTCGAGB	1 cut(s)	486
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	473, 634
SatI	GCNGC	4 cut(s)	204, 315, 318, 321
Sau3AI	GATC	4 cut(s)	47, 174, 259, 457
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	38
SfaNI	GCATC	2 cut(s)	511, 535
Sfr274I	CTCGAG	1 cut(s)	486
SlaI	CTCGAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
SphI	GCATGC	2 cut(s)	164, 284
Sse9I	AATT	5 cut(s)	20, 65, 71, 154, 394
SsiI	CCGC	3 cut(s)	268, 329, 402
SspI	AATATT	1 cut(s)	529
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	487, 532
TasI	AATT	5 cut(s)	20, 65, 71, 154, 394
TfiI	GAWTC	3 cut(s)	106, 244, 386
Tru1I	TTAA	2 cut(s)	473, 634
Tru9I	TTAA	2 cut(s)	473, 634
TscAI	CASTG	1 cut(s)	254
TseI	GCWGC	4 cut(s)	203, 314, 317, 320
TspDTI	ATGAA	1 cut(s)	525
TspRI	CASTG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	2 cut(s)	164, 284
XhoI	CTCGAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.