Rh4BG160200
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001787
Physical Location & Seq
Reverse (-)
28854350 .. 28866551
12202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG160200.1

Sequence Viewer

Length: 465 bp
ATGGCAACGAACAAGGTTGAATCAAGTGAAGGGAGCTTTTCTAGGGGATCACACAATGGTGAACAACTGCCAGCTGAAAGGCCGAGATCTACTGGCCAGTTAACTGCTATGGTTAGACCTTATGTTCGCTCCGAACTTCCTCGGTTTCTCTGGACACCTCATCTCCACCGCTGTTTTGTGCATGCAGTTGATATCCTTGGAGGAGAAGACAGAGCCACTCCAAAGAAGATCTTGAGTCTCATGAATGTTGAAGGTCTCACCATGAATCATGTAAAAAGCCATCTTCAGCCACAGCGTGCCGCGTCCAAACTTTACCCAAAAACCAAGAGACCCTCTGCCGACAAATACCACGTGACATTTAAATCATCATCATCATCATCCTCTCGAATTTTCATTCCCACACTGAAAATAGGACCCAAAAGAGAGAGCAGCACAGACCGCAAATCAACAAATTGCTTCAGATAG

Protein Analysis

154

Amino Acids

17.32

Weight (kDa)

10.4

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 51 - 96 1.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 302
AciI CCGC 3 cut(s) 169, 300, 439
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 1 cut(s) 387
AcuI CTGAAG 2 cut(s) 269, 442
AcvI CACGTG 1 cut(s) 352
AdeI CACNNNGTG 1 cut(s) 296
AgsI TTSAA 2 cut(s) 20, 251
AleI CACNNNNGTG 1 cut(s) 57
AluBI AGCT 2 cut(s) 36, 74
AluI AGCT 2 cut(s) 36, 74
Alw26I GTCTC 3 cut(s) 242, 260, 322
AlwI GGATC 1 cut(s) 55
AoxI GGCC 2 cut(s) 80, 94
ApeKI GCWGC 1 cut(s) 429
ApoI RAATTY 1 cut(s) 387
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 71, 250
AvaII GGWCC 1 cut(s) 413
BalI TGGCCA 1 cut(s) 96
BbrPI CACGTG 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 441
BccI CCATC 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 242, 260, 322
BfaI CTAG 1 cut(s) 42
BglII AGATCT 2 cut(s) 86, 228
BisI GCNGC 2 cut(s) 300, 430
BlsI GCNGC 2 cut(s) 301, 431
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 415
BpiI GAAGAC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 352
BsaI GGTCTC 2 cut(s) 260, 322
BsaJI CCNNGG 2 cut(s) 140, 196
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse1I ACTGG 2 cut(s) 97, 97
BseDI CCNNGG 2 cut(s) 140, 196
BseGI GGATG 1 cut(s) 377
BseNI ACTGG 2 cut(s) 97, 97
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 441
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 2 cut(s) 82, 96
BsmAI GTCTC 3 cut(s) 242, 260, 322
BsnI GGCC 2 cut(s) 82, 96
Bso31I GGTCTC 2 cut(s) 260, 322
Bsp143I GATC 3 cut(s) 47, 86, 228
BspACI CCGC 3 cut(s) 169, 300, 439
BspANI GGCC 2 cut(s) 82, 96
BspFNI CGCG 1 cut(s) 302
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 1 cut(s) 55
BspTNI GGTCTC 2 cut(s) 260, 322
BsrI ACTGG 2 cut(s) 97, 97
BssECI CCNNGG 2 cut(s) 140, 196
BssMI GATC 3 cut(s) 47, 86, 228
BssT1I CCWWGG 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 352
BstC8I GCNNGC 3 cut(s) 72, 183, 297
BstF5I GGATG 1 cut(s) 377
BstFNI CGCG 1 cut(s) 302
BstKTI GATC 3 cut(s) 50, 89, 231
BstMAI GTCTC 3 cut(s) 242, 260, 322
BstMBI GATC 3 cut(s) 47, 86, 228
BstMWI GCNNNNNNNGC 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 185
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 441
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 2 cut(s) 86, 228
BstYI RGATCY 2 cut(s) 86, 228
BsuRI GGCC 2 cut(s) 82, 96
BtsCI GGATG 1 cut(s) 377
BtsIMutI CAGTG 1 cut(s) 401
Cac8I GCNNGC 3 cut(s) 72, 183, 297
CciI TCATGA 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 413
CseI GACGC 1 cut(s) 291
CviAII CATG 4 cut(s) 182, 241, 262, 269
CviJI RGCY 7 cut(s) 36, 74, 82, 96, 215, 279, 289
CviKI_1 RGCY 7 cut(s) 36, 74, 82, 96, 215, 279, 289
DpnI GATC 3 cut(s) 49, 88, 230
DpnII GATC 3 cut(s) 47, 86, 228
DraI TTTAAA 1 cut(s) 361
DraIII CACNNNGTG 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 196
Eco31I GGTCTC 2 cut(s) 260, 322
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 2 cut(s) 269, 442
Eco72I CACGTG 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 413
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 4 cut(s) 185, 244, 265, 272
FaiI YATR 6 cut(s) 110, 123, 183, 242, 263, 270
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 4 cut(s) 181, 240, 261, 268
Fnu4HI GCNGC 2 cut(s) 300, 430
FokI GGATG 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 300, 430
FspBI CTAG 1 cut(s) 42
GluI GCNGC 2 cut(s) 300, 430
HaeIII GGCC 2 cut(s) 82, 96
HgaI GACGC 1 cut(s) 291
Hin1II CATG 4 cut(s) 185, 244, 265, 272
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 3 cut(s) 20, 235, 265
HpaI GTTAAC 1 cut(s) 102
HphI GGTGA 2 cut(s) 71, 250
Hpy166II GTNNAC 2 cut(s) 62, 102
Hpy188I TCNGA 2 cut(s) 133, 461
Hpy188III TCNNGA 4 cut(s) 151, 232, 241, 384
Hpy8I GTNNAC 2 cut(s) 62, 102
HpyAV CCTTC 2 cut(s) 23, 245
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 2 cut(s) 181, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 438
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 4 cut(s) 185, 244, 265, 272
KspAI GTTAAC 1 cut(s) 102
Kzo9I GATC 3 cut(s) 47, 86, 228
LmnI GCTCC 2 cut(s) 33, 134
LpnPI CCDG 4 cut(s) 78, 84, 110, 136
Lsp1109I GCAGC 1 cut(s) 441
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 49, 88, 230
MboI GATC 3 cut(s) 47, 86, 228
MboII GAAGA 3 cut(s) 218, 238, 275
MflI RGATCY 2 cut(s) 86, 228
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 2 cut(s) 387, 451
MluNI TGGCCA 1 cut(s) 96
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 5 cut(s) 150, 168, 194, 343, 391
Mox20I TGGCCA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 96
MseI TTAA 2 cut(s) 101, 360
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 96
MspA1I CMGCKG 2 cut(s) 74, 171
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 438
NdeII GATC 3 cut(s) 47, 86, 228
NlaIII CATG 4 cut(s) 185, 244, 265, 272
NlaIV GGNNCC 1 cut(s) 415
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 185
OliI CACNNNNGTG 1 cut(s) 57
PaeI GCATGC 1 cut(s) 185
PagI TCATGA 1 cut(s) 240
PfeI GAWTC 2 cut(s) 20, 265
PkrI GCNGC 2 cut(s) 301, 431
PleI GAGTC 1 cut(s) 243
PmaCI CACGTG 1 cut(s) 352
PmlI CACGTG 1 cut(s) 352
PpsI GAGTC 1 cut(s) 243
Ppu21I YACGTR 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 413
PspCI CACGTG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 413
PspPPI RGGWCCY 1 cut(s) 413
PsuI RGATCY 2 cut(s) 86, 228
PvuII CAGCTG 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 2 cut(s) 101, 360
SatI GCNGC 2 cut(s) 300, 430
Sau3AI GATC 3 cut(s) 47, 86, 228
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 244
SetI ASST 7 cut(s) 18, 38, 76, 121, 160, 256, 354
SinI GGWCC 1 cut(s) 413
SmiI ATTTAAAT 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SphI GCATGC 1 cut(s) 185
Sse9I AATT 2 cut(s) 387, 451
SsiI CCGC 3 cut(s) 169, 300, 439
SspMI CTAG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 196
SwaI ATTTAAAT 1 cut(s) 361
TaiI ACGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 385
TasI AATT 2 cut(s) 387, 451
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 2 cut(s) 20, 265
Tru1I TTAA 2 cut(s) 101, 360
Tru9I TTAA 2 cut(s) 101, 360
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 429
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 257, 278, 382
TspRI CASTG 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 1 cut(s) 387
XceI RCATGY 1 cut(s) 185
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.