Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Reverse (-)

2265647 .. 2266799

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04555.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGAGGACGGATCGTTAGATCGTACACTAGGTCAAAAGTGCCGCATTGGCGTTGGACAGATGATCTTAATCTCCTTTTTATTCAAGTTGTTGAATTACTTGGTGGCGAAAGAAGGGCAACTCCTAAGGTTATTTTGGATTTTATGGATGTGAAAAACCTCCCAATTTCACATGTGAAAAGCCATCTTCAGATGTATAGGAACAAGAAGAAAGAAGAATCTAGAAAAGAAAGGAGAATGATGCGAGAAATGAGCAGGAGGCAATCTCAACAATACATTCAAATCTACGAAAGGTACAATTGGATATTAGTGAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

106

Amino Acids

13.21

Weight (kDa)

10.94

Isoelectric Point (pI)

69.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	2 cut(s)	26, 296
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	3 cut(s)	86, 95, 281
AlwI	GGATC	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	126
BccI	CCATC	1 cut(s)	192
BfaI	CTAG	2 cut(s)	30, 222
BglI	GCCNNNNNGGC	1 cut(s)	49
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
BmsI	GCATC	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	250, 282
BsaBI	GATNNNNATC	1 cut(s)	69
Bse21I	CCTNAGG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	69
BseGI	GGATG	1 cut(s)	154
BseJI	GATNNNNATC	1 cut(s)	69
Bsp143I	GATC	3 cut(s)	12, 20, 64
BspACI	CCGC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	20
BssMI	GATC	3 cut(s)	12, 20, 64
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	3 cut(s)	15, 23, 67
BstMBI	GATC	3 cut(s)	12, 20, 64
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	176
Bsu36I	CCTNAGG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	25, 295
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	1 cut(s)	183
CviKI_1	RGCY	1 cut(s)	183
CviQI	GTAC	2 cut(s)	25, 295
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	3 cut(s)	14, 22, 66
DpnII	GATC	3 cut(s)	12, 20, 64
Eco57I	CTGAAG	1 cut(s)	173
Eco81I	CCTNAGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	176
FaiI	YATR	3 cut(s)	146, 174, 198
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	2 cut(s)	30, 222
GluI	GCNGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	176
Kzo9I	GATC	3 cut(s)	12, 20, 64
LpnPI	CCDG	1 cut(s)	241
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	30, 222
MalI	GATC	3 cut(s)	14, 22, 66
MboI	GATC	3 cut(s)	12, 20, 64
MboII	GAAGA	3 cut(s)	179, 220, 227
MfeI	CAATTG	1 cut(s)	298
MluCI	AATT	3 cut(s)	95, 165, 298
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	170, 252
MseI	TTAA	1 cut(s)	69
MunI	CAATTG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	3 cut(s)	12, 20, 64
NlaIII	CATG	1 cut(s)	176
NspI	RCATGY	1 cut(s)	176
PciI	ACATGT	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	45
PscI	ACATGT	1 cut(s)	172
RsaI	GTAC	2 cut(s)	26, 296
RsaNI	GTAC	2 cut(s)	25, 295
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	3 cut(s)	12, 20, 64
SetI	ASST	4 cut(s)	35, 132, 162, 296
SfaNI	GCATC	1 cut(s)	231
SgeI	CNNG	8 cut(s)	42, 98, 113, 185, 217, 234, 257, 268
Sse9I	AATT	3 cut(s)	95, 165, 298
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	30, 222
TasI	AATT	3 cut(s)	95, 165, 298
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TspGWI	ACGGA	1 cut(s)	25
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	2 cut(s)	30, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.