Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Reverse (-)

72716901 .. 72722069

Gene Structure 5169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCAACAAACAGGGTTGAATTAGGTGAAGGGAACTCTCTTAGGGGATCAAACAGGGGTGAACAATTACAATTACAAAGCACTCCACATTTCTCATCCTATGAGAATCAAGAAAGGAAGACTGAACCTCAGCATAAGGGAGTTCGCCGTGTGAATTTGCAAGCTGAAAGGATGATCATGCCGAGACCTACTGGCCAGTTAGCTGCTATGGAAAGCAATGATGATGAAGGGACTGATGCTAATATTAGAGGAGCTATTGATGCCACAATGCCTCAGACACTAAACTCATCATCAAATGCTGGGAGTAGTTCTAATCGTTATCCCAATTCCTCAAGCAAGGAAAAAAGACCATTGCCAAAATCAACTTCAACAGCGAATAGAGGGCGGTCTAAGATGGCCATGGTAGTTGGCTCGAGTTGTGCAGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.47

Weight (kDa)

9.79

Isoelectric Point (pI)

61.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	2 cut(s)	193, 396
AcsI	RAATTY	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	20, 369
AjuI	GAANNNNNNNTTGG	2 cut(s)	349, 381
AluBI	AGCT	5 cut(s)	164, 203, 254, 425, 429
AluI	AGCT	5 cut(s)	164, 203, 254, 425, 429
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	412
AoxI	GGCC	2 cut(s)	193, 396
ApeKI	GCWGC	2 cut(s)	203, 422
ApoI	RAATTY	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	38, 71
AsuNHI	GCTAGC	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	412
BalI	TGGCCA	2 cut(s)	195, 398
BbsI	GAAGAC	1 cut(s)	125
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	132
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	2 cut(s)	426, 430
BisI	GCNGC	2 cut(s)	204, 423
BlsI	GCNGC	2 cut(s)	205, 424
BmeT110I	CYCGRG	1 cut(s)	412
BmsI	GCATC	2 cut(s)	226, 250
BmtI	GCTAGC	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	399
Bse1I	ACTGG	2 cut(s)	196, 196
Bse3DI	GCAATG	2 cut(s)	223, 350
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	2 cut(s)	95, 177
BseMI	GCAATG	2 cut(s)	223, 350
BseMII	CTCAG	2 cut(s)	143, 287
BseNI	ACTGG	2 cut(s)	196, 196
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	299
BshFI	GGCC	2 cut(s)	195, 398
BsiHKCI	CYCGRG	1 cut(s)	412
BslFI	GGGAC	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	195, 398
Bso31I	GGTCTC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	47, 174
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	2 cut(s)	195, 398
BspCNI	CTCAG	2 cut(s)	142, 286
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	2 cut(s)	223, 350
BsrI	ACTGG	2 cut(s)	196, 196
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	2 cut(s)	47, 174
BssT1I	CCWWGG	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	162, 427
BstDEI	CTNAG	4 cut(s)	41, 129, 273, 390
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	95, 177
BstKTI	GATC	2 cut(s)	50, 177
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	47, 174
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	195, 398
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	95, 177
Cac8I	GCNNGC	2 cut(s)	162, 427
CviAII	CATG	2 cut(s)	178, 400
CviJI	RGCY	8 cut(s)	164, 195, 203, 254, 398, 411, 425, 429
CviKI_1	RGCY	8 cut(s)	164, 195, 203, 254, 398, 411, 425, 429
DdeI	CTNAG	4 cut(s)	41, 129, 273, 390
DpnI	GATC	2 cut(s)	49, 176
DpnII	GATC	2 cut(s)	47, 174
EaeI	YGGCCR	2 cut(s)	193, 396
Eco130I	CCWWGG	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	178
Eco88I	CYCGRG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	2 cut(s)	181, 403
FaiI	YATR	5 cut(s)	102, 135, 179, 209, 401
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	2 cut(s)	177, 399
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	204, 423
FokI	GGATG	2 cut(s)	82, 184
Fsp4HI	GCNGC	2 cut(s)	204, 423
FspBI	CTAG	2 cut(s)	426, 430
GluI	GCNGC	2 cut(s)	204, 423
GsaI	CCCAGC	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	195, 398
Hin1II	CATG	2 cut(s)	181, 403
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	2 cut(s)	38, 71
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	23, 221
HpyCH4V	TGCA	2 cut(s)	160, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	4 cut(s)	41, 129, 273, 390
Hsp92II	CATG	2 cut(s)	181, 403
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	47, 174
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	4 cut(s)	40, 177, 209, 285
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	226, 250
MaeI	CTAG	2 cut(s)	426, 430
MalI	GATC	2 cut(s)	49, 176
MboI	GATC	2 cut(s)	47, 174
MboII	GAAGA	1 cut(s)	130
MlsI	TGGCCA	2 cut(s)	195, 398
MluCI	AATT	5 cut(s)	20, 65, 71, 154, 325
MluNI	TGGCCA	2 cut(s)	195, 398
MnlI	CCTC	5 cut(s)	138, 242, 282, 340, 374
Mox20I	TGGCCA	2 cut(s)	195, 398
MscI	TGGCCA	2 cut(s)	195, 398
Msp20I	TGGCCA	2 cut(s)	195, 398
MwoI	GCNNNNNNNGC	1 cut(s)	260
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	47, 174
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	2 cut(s)	181, 403
NmeAIII	GCCGAG	1 cut(s)	207
PaeR7I	CTCGAG	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	205, 424
PspFI	CCCAGC	1 cut(s)	299
PspXI	VCTCGAGB	1 cut(s)	412
SatI	GCNGC	2 cut(s)	204, 423
Sau3AI	GATC	2 cut(s)	47, 174
SetI	ASST	8 cut(s)	28, 130, 166, 190, 205, 256, 427, 431
SfaNI	GCATC	2 cut(s)	226, 250
Sfr274I	CTCGAG	1 cut(s)	412
SlaI	CTCGAG	1 cut(s)	412
SmlI	CTYRAG	2 cut(s)	331, 412
SmoI	CTYRAG	2 cut(s)	331, 412
Sse9I	AATT	5 cut(s)	20, 65, 71, 154, 325
SsiI	CCGC	1 cut(s)	385
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	2 cut(s)	426, 430
StyI	CCWWGG	1 cut(s)	399
TaqI	TCGA	1 cut(s)	413
TasI	AATT	5 cut(s)	20, 65, 71, 154, 325
TfiI	GAWTC	1 cut(s)	106
TseI	GCWGC	2 cut(s)	203, 422
TspDTI	ATGAA	1 cut(s)	240
XapI	RAATTY	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	412
XspI	CTAG	2 cut(s)	426, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.