Rh5CG212300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001787
Physical Location & Seq
Forward (+)
21493141 .. 21494709
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG212300.1

Sequence Viewer

Length: 534 bp
ATGCCGAGACCTACTGGCCAGTTAGCTGCTATGGTTAGACCTTATGTTCGCTCTAAAGTGCCTCGGATTCACTGGACGCCTGATCTCCACCGCTGTTTTGTGCATGCAGTTGATATCCTTGGAGGAGCAGACAGAGCTACTCCAAAGAAGATCTTGCGAATCATGAATGTTAAAGGTCTCACCATGAATCATATAAAAAGCCATCTTCAGATGTACAGAAACATGAAAGATGAAGAATTAGTACAAGAAGCAGCAGCTGCAAGAGCGGAGGCGAATGAGAAGGGGAAGCACTCCTCGCATTCAAATGACTCGTACCTAACTGAATCAATCAATAGCTCCGCTACTCCACCCTGGAAAGATGAGAAGAAAACGAAATCTTACCTCATCTTTACAGATCTATTTCAGGGATTAACCAATAATACTCGAGAAAGCAATGATGATGAAGGGACTGATGCTAATATTCGAGGAGCTATTGATGCCACAATGCCTCAGACACTAAACTCATCTCAAATGCTGGGAGTAGTTCTAATGTAA

Protein Analysis

177

Amino Acids

19.83

Weight (kDa)

9.01

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 24 - 73 9.9e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 266
AciI CCGC 3 cut(s) 91, 266, 339
AcoI YGGCCR 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 3 cut(s) 215, 243, 314
AgsI TTSAA 1 cut(s) 303
AjnI CCWGG 1 cut(s) 350
AluBI AGCT 5 cut(s) 26, 137, 257, 336, 470
AluI AGCT 5 cut(s) 26, 137, 257, 336, 470
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 4 cut(s) 26, 251, 254, 257
ArsI GACNNNNNNTTYG 2 cut(s) 30, 62
AsuHPI GGTGA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 423
BalI TGGCCA 1 cut(s) 18
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BbvI GCAGC 4 cut(s) 13, 244, 263, 266
BccI CCATC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 182
BglII AGATCT 2 cut(s) 150, 394
BisI GCNGC 4 cut(s) 27, 252, 255, 258
BlsI GCNGC 4 cut(s) 28, 253, 256, 259
Bme1390I CCNGG 1 cut(s) 352
BmeT110I CYCGRG 1 cut(s) 423
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 2 cut(s) 442, 466
BsaHI GRCGYC 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 62, 118, 350
Bse1I ACTGG 3 cut(s) 19, 19, 77
Bse3DI GCAATG 1 cut(s) 439
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 3 cut(s) 62, 118, 350
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 3 cut(s) 19, 19, 77
BseRI GAGGAG 3 cut(s) 138, 283, 480
BseXI GCAGC 4 cut(s) 13, 244, 263, 266
BseYI CCCAGC 1 cut(s) 514
BshFI GGCC 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 460
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 423
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 3 cut(s) 82, 150, 394
BspACI CCGC 3 cut(s) 91, 266, 339
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 502
BspHI TCATGA 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 439
BsrGI TGTACA 1 cut(s) 213
BsrI ACTGG 3 cut(s) 19, 19, 77
BssECI CCNNGG 3 cut(s) 62, 118, 350
BssMI GATC 3 cut(s) 82, 150, 394
BssNI GRCGYC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 352
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 489
BstKTI GATC 3 cut(s) 85, 153, 397
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 3 cut(s) 82, 150, 394
BstMWI GCNNNNNNNGC 5 cut(s) 134, 257, 263, 295, 476
BstNI CCWGG 1 cut(s) 352
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 350
BstV1I GCAGC 4 cut(s) 13, 244, 263, 266
BstX2I RGATCY 2 cut(s) 150, 394
BstYI RGATCY 2 cut(s) 150, 394
BsuRI GGCC 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 257
CciI TCATGA 1 cut(s) 162
CseI GACGC 1 cut(s) 85
Csp6I GTAC 3 cut(s) 214, 242, 313
CviAII CATG 4 cut(s) 104, 163, 184, 223
CviJI RGCY 7 cut(s) 18, 26, 137, 201, 257, 336, 470
CviKI_1 RGCY 7 cut(s) 18, 26, 137, 201, 257, 336, 470
CviQI GTAC 3 cut(s) 214, 242, 313
DdeI CTNAG 1 cut(s) 489
DpnI GATC 3 cut(s) 84, 152, 396
DpnII GATC 3 cut(s) 82, 150, 394
EaeI YGGCCR 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 182
Eco32I GATATC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 350
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 4 cut(s) 107, 166, 187, 226
FaiI YATR 8 cut(s) 32, 45, 105, 164, 185, 192, 194, 224
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 460
FatI CATG 4 cut(s) 103, 162, 183, 222
Fnu4HI GCNGC 4 cut(s) 27, 252, 255, 258
Fsp4HI GCNGC 4 cut(s) 27, 252, 255, 258
GluI GCNGC 4 cut(s) 27, 252, 255, 258
GsaI CCCAGC 1 cut(s) 518
HaeIII GGCC 1 cut(s) 18
HgaI GACGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 4 cut(s) 107, 166, 187, 226
HinfI GANTC 5 cut(s) 67, 159, 187, 308, 323
HphI GGTGA 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 66, 210, 492
Hpy188III TCNNGA 2 cut(s) 163, 425
HpyAV CCTTC 2 cut(s) 274, 437
HpyCH4V TGCA 3 cut(s) 103, 107, 260
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 257, 263, 295, 476
HpyF3I CTNAG 1 cut(s) 489
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 4 cut(s) 107, 166, 187, 226
Kzo9I GATC 3 cut(s) 82, 150, 394
LmnI GCTCC 3 cut(s) 125, 341, 467
LpnPI CCDG 7 cut(s) 32, 58, 93, 337, 364, 389, 500
Lsp1109I GCAGC 4 cut(s) 13, 244, 263, 266
LweI GCATC 2 cut(s) 442, 466
MalI GATC 3 cut(s) 84, 152, 396
MbiI CCGCTC 1 cut(s) 266
MboI GATC 3 cut(s) 82, 150, 394
MboII GAAGA 4 cut(s) 160, 197, 245, 376
MflI RGATCY 2 cut(s) 150, 394
MlsI TGGCCA 1 cut(s) 18
MluCI AATT 1 cut(s) 236
MluNI TGGCCA 1 cut(s) 18
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 7 cut(s) 72, 116, 262, 304, 392, 458, 498
Mox20I TGGCCA 1 cut(s) 18
MscI TGGCCA 1 cut(s) 18
MseI TTAA 2 cut(s) 171, 410
MslI CAYNNNNRTG 1 cut(s) 303
Msp20I TGGCCA 1 cut(s) 18
MspA1I CMGCKG 2 cut(s) 93, 257
MspR9I CCNGG 1 cut(s) 352
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 5 cut(s) 134, 257, 263, 295, 476
NdeII GATC 3 cut(s) 82, 150, 394
NlaIII CATG 4 cut(s) 107, 166, 187, 226
NmeAIII GCCGAG 1 cut(s) 30
NspI RCATGY 1 cut(s) 107
PaeI GCATGC 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 423
PagI TCATGA 1 cut(s) 162
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 4 cut(s) 67, 159, 187, 323
PkrI GCNGC 4 cut(s) 28, 253, 256, 259
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 1 cut(s) 350
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 2 cut(s) 150, 394
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 3 cut(s) 215, 243, 314
RsaNI GTAC 3 cut(s) 214, 242, 313
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 2 cut(s) 171, 410
SatI GCNGC 4 cut(s) 27, 252, 255, 258
Sau3AI GATC 3 cut(s) 82, 150, 394
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 352
SfaNI GCATC 2 cut(s) 442, 466
Sfr274I CTCGAG 1 cut(s) 423
SlaI CTCGAG 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
SphI GCATGC 1 cut(s) 107
Sse9I AATT 1 cut(s) 236
SsiI CCGC 3 cut(s) 91, 266, 339
SspI AATATT 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 350
StyI CCWWGG 1 cut(s) 118
TaqI TCGA 2 cut(s) 424, 463
TasI AATT 1 cut(s) 236
TatI WGTACW 2 cut(s) 213, 241
TfiI GAWTC 4 cut(s) 67, 159, 187, 323
Tru1I TTAA 2 cut(s) 171, 410
Tru9I TTAA 2 cut(s) 171, 410
TscAI CASTG 1 cut(s) 77
TseI GCWGC 4 cut(s) 26, 251, 254, 257
TspDTI ATGAA 5 cut(s) 179, 200, 239, 246, 456
TspRI CASTG 1 cut(s) 77
XceI RCATGY 1 cut(s) 107
XhoI CTCGAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.