Rw4G013410
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001787
Physical Location & Seq
Reverse (-)
31365055 .. 31366035
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G013410.1

Sequence Viewer

Length: 426 bp
ATGGCAACGAACAAGGTTGAATCAAGTGAAGGGAGCTTTTCTTGGGGATCACACAATGGTGAACAACTGCCAGCTGAAAGGACGAGACCTACTGGCCAGTTAACTGCTATGGTTAGACCTTATGTTCGCTCCGAACTTCCTCGGTTTCGGTGGACACCTCATCTCCACCGCTGTTTTGTGCATGCAGTTGATATCCTTGGAGGAGAAGACAGAGCCACTCCAAAGAAGATCTTGAGGATCATGAATGTTGAAGGTCTCACCATGAATCATGTAAAAAGCCATCTTCAGAAGTACAGAAACATGAAACATGCAGAACTCATACAAGAAGCAGCAGCAGCTGCAAGAGCAAAGGAGAATGAGAAGGGGAAGTACTCTTACCTACCGAATCGATCAATTAATAGCTCCGCTACTCCACCCTGGTATTGA

Protein Analysis

141

Amino Acids

16.07

Weight (kDa)

9.88

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 50 - 99 1.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 169, 405
AclWI GGATC 2 cut(s) 55, 245
AcoI YGGCCR 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 2 cut(s) 293, 371
AgsI TTSAA 2 cut(s) 20, 251
AjnI CCWGG 1 cut(s) 416
AleI CACNNNNGTG 1 cut(s) 57
AluBI AGCT 4 cut(s) 36, 74, 338, 402
AluI AGCT 4 cut(s) 36, 74, 338, 402
Alw26I GTCTC 2 cut(s) 79, 260
AlwI GGATC 2 cut(s) 55, 245
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 4 cut(s) 329, 332, 335, 338
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AseI ATTAAT 1 cut(s) 396
AsuHPI GGTGA 2 cut(s) 71, 250
BalI TGGCCA 1 cut(s) 96
BarI GAAGNNNNNNTAC 4 cut(s) 353, 359, 385, 391
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 4 cut(s) 325, 341, 344, 347
BccI CCATC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 79, 260
BglII AGATCT 1 cut(s) 228
BisI GCNGC 4 cut(s) 330, 333, 336, 339
BlsI GCNGC 4 cut(s) 331, 334, 337, 340
BmcAI AGTACT 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 253
Bsa29I ATCGAT 1 cut(s) 388
BsaI GGTCTC 2 cut(s) 79, 260
BsaJI CCNNGG 3 cut(s) 140, 196, 416
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse1I ACTGG 2 cut(s) 97, 97
BseBI CCWGG 1 cut(s) 418
BseCI ATCGAT 1 cut(s) 388
BseDI CCNNGG 3 cut(s) 140, 196, 416
BseNI ACTGG 2 cut(s) 97, 97
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 4 cut(s) 325, 341, 344, 347
BshFI GGCC 1 cut(s) 96
BshVI ATCGAT 1 cut(s) 388
BsmAI GTCTC 2 cut(s) 79, 260
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 2 cut(s) 79, 260
Bsp143I GATC 4 cut(s) 47, 228, 237, 389
BspACI CCGC 2 cut(s) 169, 405
BspANI GGCC 1 cut(s) 96
BspDI ATCGAT 1 cut(s) 388
BspHI TCATGA 1 cut(s) 240
BspPI GGATC 2 cut(s) 55, 245
BspTNI GGTCTC 2 cut(s) 79, 260
BsrI ACTGG 2 cut(s) 97, 97
BssECI CCNNGG 3 cut(s) 140, 196, 416
BssMI GATC 4 cut(s) 47, 228, 237, 389
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 418
BstAPI GCANNNNNTGC 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 72, 183
BstKTI GATC 4 cut(s) 50, 231, 240, 392
BstMAI GTCTC 2 cut(s) 79, 260
BstMBI GATC 4 cut(s) 47, 228, 237, 389
BstMWI GCNNNNNNNGC 3 cut(s) 335, 338, 344
BstNI CCWGG 1 cut(s) 418
BstNSI RCATGY 2 cut(s) 185, 311
BstSCI CCNGG 1 cut(s) 416
BstV1I GCAGC 4 cut(s) 325, 341, 344, 347
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
Bsu15I ATCGAT 1 cut(s) 388
BsuRI GGCC 1 cut(s) 96
BsuTUI ATCGAT 1 cut(s) 388
Cac8I GCNNGC 2 cut(s) 72, 183
CaiI CAGNNNCTG 1 cut(s) 338
CciI TCATGA 1 cut(s) 240
ClaI ATCGAT 1 cut(s) 388
Csp6I GTAC 2 cut(s) 292, 370
CviAII CATG 6 cut(s) 182, 241, 262, 269, 301, 308
CviJI RGCY 7 cut(s) 36, 74, 96, 215, 279, 338, 402
CviKI_1 RGCY 7 cut(s) 36, 74, 96, 215, 279, 338, 402
CviQI GTAC 2 cut(s) 292, 370
DpnI GATC 4 cut(s) 49, 230, 239, 391
DpnII GATC 4 cut(s) 47, 228, 237, 389
EaeI YGGCCR 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 196
Eco31I GGTCTC 2 cut(s) 79, 260
Eco32I GATATC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 416
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 6 cut(s) 185, 244, 265, 272, 304, 311
FaiI YATR 9 cut(s) 110, 123, 183, 242, 263, 270, 302, 309, 320
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 6 cut(s) 181, 240, 261, 268, 300, 307
Fnu4HI GCNGC 4 cut(s) 330, 333, 336, 339
Fsp4HI GCNGC 4 cut(s) 330, 333, 336, 339
GluI GCNGC 4 cut(s) 330, 333, 336, 339
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 6 cut(s) 185, 244, 265, 272, 304, 311
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 3 cut(s) 20, 265, 385
HpaI GTTAAC 1 cut(s) 102
HphI GGTGA 2 cut(s) 71, 250
Hpy166II GTNNAC 3 cut(s) 62, 102, 153
Hpy188I TCNGA 2 cut(s) 133, 288
Hpy188III TCNNGA 2 cut(s) 232, 241
Hpy8I GTNNAC 3 cut(s) 62, 102, 153
HpyAV CCTTC 3 cut(s) 23, 245, 355
HpyCH4V TGCA 4 cut(s) 181, 185, 311, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 338, 344
Hsp92II CATG 6 cut(s) 185, 244, 265, 272, 304, 311
KspAI GTTAAC 1 cut(s) 102
Kzo9I GATC 4 cut(s) 47, 228, 237, 389
LmnI GCTCC 3 cut(s) 33, 134, 407
LpnPI CCDG 4 cut(s) 78, 84, 110, 403
Lsp1109I GCAGC 4 cut(s) 325, 341, 344, 347
MalI GATC 4 cut(s) 49, 230, 239, 391
MboI GATC 4 cut(s) 47, 228, 237, 389
MboII GAAGA 3 cut(s) 218, 238, 275
MflI RGATCY 1 cut(s) 228
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 1 cut(s) 393
MluNI TGGCCA 1 cut(s) 96
MnlI CCTC 4 cut(s) 150, 168, 194, 228
Mox20I TGGCCA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 96
MseI TTAA 2 cut(s) 101, 396
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 96
MspA1I CMGCKG 3 cut(s) 74, 171, 338
MspR9I CCNGG 1 cut(s) 418
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 3 cut(s) 335, 338, 344
NdeII GATC 4 cut(s) 47, 228, 237, 389
NlaIII CATG 6 cut(s) 185, 244, 265, 272, 304, 311
NspI RCATGY 2 cut(s) 185, 311
OliI CACNNNNGTG 1 cut(s) 57
PaeI GCATGC 1 cut(s) 185
PagI TCATGA 1 cut(s) 240
PfeI GAWTC 3 cut(s) 20, 265, 385
PkrI GCNGC 4 cut(s) 331, 334, 337, 340
PshBI ATTAAT 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 416
PspGI CCWGG 1 cut(s) 416
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 1 cut(s) 228
PvuII CAGCTG 2 cut(s) 74, 338
RsaI GTAC 2 cut(s) 293, 371
RsaNI GTAC 2 cut(s) 292, 370
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 2 cut(s) 101, 396
SatI GCNGC 4 cut(s) 330, 333, 336, 339
Sau3AI GATC 4 cut(s) 47, 228, 237, 389
ScaI AGTACT 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 418
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SphI GCATGC 1 cut(s) 185
Sse9I AATT 1 cut(s) 393
SsiI CCGC 2 cut(s) 169, 405
StyD4I CCNGG 1 cut(s) 416
StyI CCWWGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 388
TasI AATT 1 cut(s) 393
TatI WGTACW 2 cut(s) 291, 369
TfiI GAWTC 3 cut(s) 20, 265, 385
Tru1I TTAA 2 cut(s) 101, 396
Tru9I TTAA 2 cut(s) 101, 396
TseI GCWGC 4 cut(s) 329, 332, 335, 338
TspDTI ATGAA 3 cut(s) 257, 278, 317
VspI ATTAAT 1 cut(s) 396
XceI RCATGY 2 cut(s) 185, 311
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.