Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Reverse (-)

937913 .. 939770

Gene Structure 1858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAAGAGAGTTGAGATAGTTGATCGTCTGAGTTCTCTTATGAGCTTTTCGTCCTCTTCACTTGACAATGGAGAAGTTGTATATTCTCCGAGCTACTCGTCATTTGGTGATCAAGCTGATCAAGCTAGTTTGCCAGCGCAGCAGATGAGCCTGATGAAACCATCAGCTACAGTTAGACCTTATCTTCGTTCGAAAATGCCTCGGCTTCGTTGGTCGTCTGATCTTCACCGCTGTTTTGTGCATGCAGTTGAAAGGCTTGGAGGAGAAGACAGAGCTACTCCAAAGTTGATTCTGCAGATCATGAATGTGAAGGGCCTTACCATATCTCATGTAAAAAGTCATCTTCAGATGTGCAGGAGCATGAAGCATGAAAAACGCATACAAGAAGCGGCTATAGCAGCAAAGAGGAATGATAAGGCAAAGCTCCCCGACACAAGCAATTCATACTTGCTACATCCAACCAAGAGTATTGCTACTCTCCCTTGTTGCCAAAGGAGCAATTGGATGATGAGAAACATGTACAACAGTGCACCCTACCATAGCAATAGAAGCTTTTACTGCATTGAAGGAATTGATCACAATAATACCAGCACTGTGGCAAAATGGAACAATGAGAATTGCAAACAGAATTCTTACTTCATATTCACAGATCTAGTCAAAAGAGGCAGTGATAATGCTCAAGAGAGCAATGATCAAGTGAAAGCACTGTCATTAGTCAATGCTGGTTGCCATAGCACTCATAATAAACTGGAAGATTTAGCAACAGGAGCCCATATTGATGCCGCAATGTCTCCATCACTCAAATCATCACCAAAAGCTTATTATTCTCAGCAGTTCAGGCTAAGGGACGCTGCGAATTCAGTTGTGGATGATGTCTCTCTTGAACTTAGTCTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

300

Amino Acids

33.54

Weight (kDa)

9.18

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	68 - 118	6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	229, 389, 783
AcsI	RAATTY	2 cut(s)	628, 856
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	521
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	3 cut(s)	251, 566, 884
AluBI	AGCT	9 cut(s)	45, 93, 116, 125, 167, 275, 424, 552, 818
AluI	AGCT	9 cut(s)	45, 93, 116, 125, 167, 275, 424, 552, 818
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	2 cut(s)	795, 880
Alw44I	GTGCAC	1 cut(s)	528
AoxI	GGCC	1 cut(s)	313
ApaLI	GTGCAC	1 cut(s)	528
ApeKI	GCWGC	3 cut(s)	139, 398, 851
ApoI	RAATTY	2 cut(s)	628, 856
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	3 cut(s)	119, 218, 801
AsuII	TTCGAA	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	772
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	3 cut(s)	151, 410, 838
BccI	CCATC	2 cut(s)	169, 802
BclI	TGATCA	4 cut(s)	109, 118, 574, 691
BcoDI	GTCTC	2 cut(s)	795, 880
BfaI	CTAG	2 cut(s)	126, 653
BfmI	CTRYAG	3 cut(s)	168, 293, 393
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	5 cut(s)	140, 390, 399, 783, 852
BlsI	GCNGC	5 cut(s)	141, 391, 400, 784, 853
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	769
BmsI	GCATC	1 cut(s)	769
BpiI	GAAGAC	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	842
Bpu14I	TTCGAA	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	663
BsaJI	CCNNGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bse1I	ACTGG	1 cut(s)	753
Bse3DI	GCAATG	2 cut(s)	694, 792
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	3 cut(s)	454, 510, 874
BseMI	GCAATG	2 cut(s)	694, 792
BseMII	CTCAG	2 cut(s)	20, 842
BseNI	ACTGG	1 cut(s)	753
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	3 cut(s)	151, 410, 838
BsgI	GTGCAG	1 cut(s)	373
BshFI	GGCC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	860
BsmAI	GTCTC	2 cut(s)	795, 880
BsmFI	GGGAC	1 cut(s)	860
BsnI	GGCC	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	532, 772
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	8 cut(s)	22, 109, 118, 220, 297, 574, 649, 691
BspACI	CCGC	3 cut(s)	229, 389, 783
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	2 cut(s)	21, 841
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	769
BspMAI	CTGCAG	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	694, 792
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	753
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	8 cut(s)	22, 109, 118, 220, 297, 574, 649, 691
Bst4CI	ACNGT	4 cut(s)	172, 527, 595, 708
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	135, 243
BstDEI	CTNAG	5 cut(s)	29, 828, 842, 887, 893
BstF5I	GGATG	3 cut(s)	454, 510, 874
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	8 cut(s)	25, 112, 121, 223, 300, 577, 652, 694
BstMAI	GTCTC	2 cut(s)	795, 880
BstMBI	GATC	8 cut(s)	22, 109, 118, 220, 297, 574, 649, 691
BstMWI	GCNNNNNNNGC	9 cut(s)	122, 139, 395, 398, 495, 549, 558, 767, 838
BstNSI	RCATGY	2 cut(s)	245, 520
BstSFI	CTRYAG	3 cut(s)	168, 293, 393
BstSLI	GKGCMC	1 cut(s)	532
BstV1I	GCAGC	3 cut(s)	151, 410, 838
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	649
BstXI	CCANNNNNNTGG	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	454, 510, 874
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	4 cut(s)	532, 591, 673, 704
Cac8I	GCNNGC	2 cut(s)	135, 243
CciI	TCATGA	1 cut(s)	300
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	857
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	6 cut(s)	242, 301, 329, 361, 368, 517
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	5 cut(s)	29, 828, 842, 887, 893
DpnI	GATC	8 cut(s)	24, 111, 120, 222, 299, 576, 651, 693
DpnII	GATC	8 cut(s)	22, 109, 118, 220, 297, 574, 649, 691
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	772
Eco57I	CTGAAG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRI	GAATTC	2 cut(s)	628, 856
EcoT38I	GRGCYC	1 cut(s)	772
FaeI	CATG	6 cut(s)	245, 304, 332, 364, 371, 520
FaqI	GGGAC	1 cut(s)	860
FatI	CATG	6 cut(s)	241, 300, 328, 360, 367, 516
FbaI	TGATCA	4 cut(s)	109, 118, 574, 691
Fnu4HI	GCNGC	5 cut(s)	140, 390, 399, 783, 852
FokI	GGATG	3 cut(s)	441, 517, 881
FriOI	GRGCYC	1 cut(s)	772
Fsp4HI	GCNGC	5 cut(s)	140, 390, 399, 783, 852
FspBI	CTAG	2 cut(s)	126, 653
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	5 cut(s)	140, 390, 399, 783, 852
HaeIII	GGCC	1 cut(s)	315
HgaI	GACGC	1 cut(s)	857
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	6 cut(s)	245, 304, 332, 364, 371, 520
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HindIII	AAGCTT	2 cut(s)	550, 816
HinfI	GANTC	1 cut(s)	289
HphI	GGTGA	3 cut(s)	119, 218, 801
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	4 cut(s)	30, 90, 220, 348
Hpy188III	TCNNGA	3 cut(s)	301, 680, 881
Hpy8I	GTNNAC	1 cut(s)	530
HpyAV	CCTTC	2 cut(s)	304, 560
HpyCH4III	ACNGT	4 cut(s)	172, 527, 595, 708
HpyCH4V	TGCA	7 cut(s)	241, 245, 295, 354, 530, 561, 621
HpyF10VI	GCNNNNNNNGC	9 cut(s)	122, 139, 395, 398, 495, 549, 558, 767, 838
HpyF3I	CTNAG	5 cut(s)	29, 828, 842, 887, 893
Hsp92II	CATG	6 cut(s)	245, 304, 332, 364, 371, 520
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	4 cut(s)	109, 118, 574, 691
Kzo9I	GATC	8 cut(s)	22, 109, 118, 220, 297, 574, 649, 691
LmnI	GCTCC	4 cut(s)	357, 429, 495, 767
LpnPI	CCDG	8 cut(s)	147, 164, 340, 601, 708, 734, 750, 823
Lsp1109I	GCAGC	3 cut(s)	151, 410, 838
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	2 cut(s)	126, 653
MalI	GATC	8 cut(s)	24, 111, 120, 222, 299, 576, 651, 693
MboI	GATC	8 cut(s)	22, 109, 118, 220, 297, 574, 649, 691
MboII	GAAGA	7 cut(s)	16, 48, 176, 215, 278, 335, 764
MfeI	CAATTG	1 cut(s)	499
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	2 cut(s)	532, 772
MluCI	AATT	6 cut(s)	439, 499, 570, 616, 628, 856
MmeI	TCCRAC	1 cut(s)	482
MnlI	CCTC	5 cut(s)	64, 210, 254, 399, 656
MseI	TTAA	1 cut(s)	898
MslI	CAYNNNNRTG	2 cut(s)	305, 777
MspA1I	CMGCKG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	499
MwoI	GCNNNNNNNGC	9 cut(s)	122, 139, 395, 398, 495, 549, 558, 767, 838
NdeII	GATC	8 cut(s)	22, 109, 118, 220, 297, 574, 649, 691
NlaIII	CATG	6 cut(s)	245, 304, 332, 364, 371, 520
NlaIV	GGNNCC	1 cut(s)	769
NmeAIII	GCCGAG	1 cut(s)	181
NspI	RCATGY	2 cut(s)	245, 520
NspV	TTCGAA	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	245
PagI	TCATGA	1 cut(s)	300
PciI	ACATGT	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	5 cut(s)	141, 391, 400, 784, 853
PscI	ACATGT	1 cut(s)	516
PspN4I	GGNNCC	1 cut(s)	769
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	2 cut(s)	305, 777
SaqAI	TTAA	1 cut(s)	898
SatI	GCNGC	5 cut(s)	140, 390, 399, 783, 852
Sau3AI	GATC	8 cut(s)	22, 109, 118, 220, 297, 574, 649, 691
Sau96I	GGNCC	1 cut(s)	313
SduI	GDGCHC	2 cut(s)	532, 772
SfaNI	GCATC	1 cut(s)	769
SfcI	CTRYAG	3 cut(s)	168, 293, 393
SfuI	TTCGAA	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	305, 777
SmlI	CTYRAG	1 cut(s)	678
SmoI	CTYRAG	1 cut(s)	678
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	6 cut(s)	439, 499, 570, 616, 628, 856
SsiI	CCGC	3 cut(s)	229, 389, 783
SspMI	CTAG	2 cut(s)	126, 653
TaaI	ACNGT	4 cut(s)	172, 527, 595, 708
TaqI	TCGA	1 cut(s)	191
TasI	AATT	6 cut(s)	439, 499, 570, 616, 628, 856
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	2 cut(s)	392, 785
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	898
Tru9I	TTAA	1 cut(s)	898
TscAI	CASTG	4 cut(s)	532, 598, 673, 711
TseI	GCWGC	3 cut(s)	139, 398, 851
TspDTI	ATGAA	7 cut(s)	17, 170, 317, 377, 384, 432, 628
TspRI	CASTG	4 cut(s)	532, 598, 673, 711
VneI	GTGCAC	1 cut(s)	528
XapI	RAATTY	2 cut(s)	628, 856
XceI	RCATGY	2 cut(s)	245, 520
XspI	CTAG	2 cut(s)	126, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.