Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00646

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Reverse (-)

29630 .. 30592

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCAACCAATAAGGTTGAATCAAGTGAAAGGGAGCTTAATGGTGAACAACTGCCAGCTGAAAGGCCGAGACCTACTGGCCAGTTAACTGCTATGGTTAGACCTTATGTTCGCTCCGAACTACCTCGGTTTCGTGGACACCTCTTCTCCACCGCTGTTTTGTGCATGCAGAGCCACTCCAAAGAAGCCTTGAGGTTGAGGATCATGAATGTTGAAGGTCTCACCATGAATCATGTAAAAAGCCATCTTCAGAAGTACAGAAACATGAAACATGCAGAACTCATACAAGAAGCAGCAGCAGCTGCAAGAGCAAAGGAGAATGAGAAGGGGAAGTACTCTTACCTACCTGAATCAATTAATAGCTCCGCTACTCCACCCTGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

128

Amino Acids

14.59

Weight (kDa)

9.67

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	153, 366
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	2 cut(s)	257, 335
AgsI	TTSAA	2 cut(s)	20, 215
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	4 cut(s)	37, 59, 302, 363
AluI	AGCT	4 cut(s)	37, 59, 302, 363
Alw26I	GTCTC	2 cut(s)	64, 224
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	65, 79
ApeKI	GCWGC	4 cut(s)	293, 296, 299, 302
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AseI	ATTAAT	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	56, 214
BalI	TGGCCA	1 cut(s)	81
BarI	GAAGNNNNNNTAC	4 cut(s)	317, 323, 349, 355
BbvI	GCAGC	4 cut(s)	289, 305, 308, 311
BccI	CCATC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	64, 224
BisI	GCNGC	4 cut(s)	294, 297, 300, 303
BlsI	GCNGC	4 cut(s)	295, 298, 301, 304
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	379
BmrFI	CCNGG	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	211
BsaI	GGTCTC	2 cut(s)	64, 224
BsaJI	CCNNGG	2 cut(s)	125, 377
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bse1I	ACTGG	2 cut(s)	82, 82
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	2 cut(s)	125, 377
BseNI	ACTGG	2 cut(s)	82, 82
BseXI	GCAGC	4 cut(s)	289, 305, 308, 311
BshFI	GGCC	2 cut(s)	67, 81
BsmAI	GTCTC	2 cut(s)	64, 224
BsnI	GGCC	2 cut(s)	67, 81
Bso31I	GGTCTC	2 cut(s)	64, 224
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	153, 366
BspANI	GGCC	2 cut(s)	67, 81
BspHI	TCATGA	1 cut(s)	204
BspPI	GGATC	1 cut(s)	209
BspTNI	GGTCTC	2 cut(s)	64, 224
BsrI	ACTGG	2 cut(s)	82, 82
BssECI	CCNNGG	2 cut(s)	125, 377
BssMI	GATC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	379
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	57, 167
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	2 cut(s)	64, 224
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 299, 302, 308
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	2 cut(s)	169, 275
BstSCI	CCNGG	1 cut(s)	377
BstV1I	GCAGC	4 cut(s)	289, 305, 308, 311
BsuRI	GGCC	2 cut(s)	67, 81
Cac8I	GCNNGC	2 cut(s)	57, 167
CaiI	CAGNNNCTG	1 cut(s)	302
CciI	TCATGA	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	256, 334
CviAII	CATG	6 cut(s)	166, 205, 226, 233, 265, 272
CviJI	RGCY	9 cut(s)	37, 59, 67, 81, 174, 188, 243, 302, 363
CviKI_1	RGCY	9 cut(s)	37, 59, 67, 81, 174, 188, 243, 302, 363
CviQI	GTAC	2 cut(s)	256, 334
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco31I	GGTCTC	2 cut(s)	64, 224
Eco57I	CTGAAG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	377
FaeI	CATG	6 cut(s)	169, 208, 229, 236, 268, 275
FaiI	YATR	9 cut(s)	95, 108, 167, 206, 227, 234, 266, 273, 284
FatI	CATG	6 cut(s)	165, 204, 225, 232, 264, 271
Fnu4HI	GCNGC	4 cut(s)	294, 297, 300, 303
Fsp4HI	GCNGC	4 cut(s)	294, 297, 300, 303
GluI	GCNGC	4 cut(s)	294, 297, 300, 303
HaeIII	GGCC	2 cut(s)	67, 81
Hin1II	CATG	6 cut(s)	169, 208, 229, 236, 268, 275
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	3 cut(s)	20, 229, 350
HpaI	GTTAAC	1 cut(s)	87
HphI	GGTGA	2 cut(s)	56, 214
Hpy166II	GTNNAC	3 cut(s)	47, 87, 137
Hpy188I	TCNGA	2 cut(s)	118, 252
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	3 cut(s)	47, 87, 137
HpyAV	CCTTC	2 cut(s)	209, 319
HpyCH4V	TGCA	4 cut(s)	165, 169, 275, 305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 299, 302, 308
Hsp92II	CATG	6 cut(s)	169, 208, 229, 236, 268, 275
KspAI	GTTAAC	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	3 cut(s)	34, 119, 368
LpnPI	CCDG	5 cut(s)	63, 69, 95, 360, 364
Lsp1109I	GCAGC	4 cut(s)	289, 305, 308, 311
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	2 cut(s)	136, 239
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	81
MnlI	CCTC	4 cut(s)	135, 152, 186, 192
Mox20I	TGGCCA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	3 cut(s)	39, 86, 357
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	3 cut(s)	59, 155, 302
MspR9I	CCNGG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	4 cut(s)	171, 299, 302, 308
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	6 cut(s)	169, 208, 229, 236, 268, 275
NmeAIII	GCCGAG	1 cut(s)	93
NspI	RCATGY	2 cut(s)	169, 275
PaeI	GCATGC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	20, 229, 350
PkrI	GCNGC	4 cut(s)	295, 298, 301, 304
PshBI	ATTAAT	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PstNI	CAGNNNCTG	1 cut(s)	302
PvuII	CAGCTG	2 cut(s)	59, 302
RsaI	GTAC	2 cut(s)	257, 335
RsaNI	GTAC	2 cut(s)	256, 334
SaqAI	TTAA	3 cut(s)	39, 86, 357
SatI	GCNGC	4 cut(s)	294, 297, 300, 303
Sau3AI	GATC	1 cut(s)	201
ScaI	AGTACT	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
SphI	GCATGC	1 cut(s)	169
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	2 cut(s)	153, 366
StyD4I	CCNGG	1 cut(s)	377
TasI	AATT	1 cut(s)	354
TatI	WGTACW	2 cut(s)	255, 333
TfiI	GAWTC	3 cut(s)	20, 229, 350
Tru1I	TTAA	3 cut(s)	39, 86, 357
Tru9I	TTAA	3 cut(s)	39, 86, 357
TseI	GCWGC	4 cut(s)	293, 296, 299, 302
TspDTI	ATGAA	3 cut(s)	221, 242, 281
VspI	ATTAAT	1 cut(s)	357
XceI	RCATGY	2 cut(s)	169, 275
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.