Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8356799.1

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Forward (+)

428 .. 899

Gene Structure 472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8356799.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggagagagttgagatagttgatcgtttgagttctcttgtgagctcttcgtcctcttcacttgacaatggagaagtatattctccgaactgctcgtcatttggtgatcatgctatgagaattgcagctcaaagaatgagagttcactatactaatttgccagcccatcagataagcctgctgaaatcatcaactacagttagaccttatgttcgttcgaaagtgcctcggcttcgttggtcacctgatcttcaccgctgttttgtgcatgcagttgaaaggcttggaggagaagacagagctactccaaagttgattttggagatcatgaatgtgaagggccttaccatatctcatataaaaagccatcttcaggtgagctgctcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

129

Amino Acids

14.48

Weight (kDa)

9.66

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	4 cut(s)	45, 128, 302, 381
AluI	AGCT	4 cut(s)	45, 128, 302, 381
Alw21I	GWGCWC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	125, 381
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 195, 227
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	4 cut(s)	116, 234, 245, 388
AsuII	TTCGAA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	137, 368
BccI	CCATC	2 cut(s)	174, 375
BclI	TGATCA	1 cut(s)	106
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	2 cut(s)	126, 382
BlsI	GCNGC	2 cut(s)	127, 383
BmgT120I	GGNCC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	137, 368
BshFI	GGCC	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	373
BsnI	GGCC	1 cut(s)	342
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	4 cut(s)	22, 106, 247, 324
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	4 cut(s)	22, 106, 247, 324
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	52, 61
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	162, 179, 270
BstEII	GGTNACC	1 cut(s)	240
BstKTI	GATC	4 cut(s)	25, 109, 250, 327
BstMBI	GATC	4 cut(s)	22, 106, 247, 324
BstNSI	RCATGY	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	137, 368
BstV2I	GAAGAC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	342
Cac8I	GCNNGC	3 cut(s)	162, 179, 270
CciI	TCATGA	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	340
CviAII	CATG	3 cut(s)	110, 269, 328
DpnI	GATC	4 cut(s)	24, 108, 249, 326
DpnII	GATC	4 cut(s)	22, 106, 247, 324
Eam1104I	CTCTTC	2 cut(s)	52, 61
EarI	CTCTTC	2 cut(s)	52, 61
Ecl136II	GAGCTC	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	356
Eco91I	GGTNACC	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	47
FaeI	CATG	3 cut(s)	113, 272, 331
FatI	CATG	3 cut(s)	109, 268, 327
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	126, 382
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	126, 382
GluI	GCNGC	2 cut(s)	126, 382
HaeIII	GGCC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	113, 272, 331
HphI	GGTGA	4 cut(s)	116, 234, 245, 388
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	87, 171
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	125, 268, 272
Hsp92II	CATG	3 cut(s)	113, 272, 331
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	22, 106, 247, 324
LguI	GCTCTTC	1 cut(s)	52
LpnPI	CCDG	4 cut(s)	174, 191, 258, 359
Lsp1109I	GCAGC	2 cut(s)	137, 368
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	4 cut(s)	24, 108, 249, 326
MboI	GATC	4 cut(s)	22, 106, 247, 324
MboII	GAAGA	5 cut(s)	39, 48, 242, 305, 362
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	2 cut(s)	120, 154
MnlI	CCTC	3 cut(s)	64, 237, 281
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	258
NdeII	GATC	4 cut(s)	22, 106, 247, 324
NlaIII	CATG	3 cut(s)	113, 272, 331
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	240
NspI	RCATGY	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	272
PagI	TCATGA	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	127, 383
Psp124BI	GAGCTC	1 cut(s)	47
PspEI	GGTNACC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	52
SatI	GCNGC	2 cut(s)	126, 382
Sau3AI	GATC	4 cut(s)	22, 106, 247, 324
Sau96I	GGNCC	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	7 cut(s)	47, 130, 208, 247, 304, 378, 383
SfcI	CTRYAG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	332
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	120, 154
SsiI	CCGC	1 cut(s)	256
SstI	GAGCTC	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	218
TasI	AATT	2 cut(s)	120, 154
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	2 cut(s)	125, 381
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	1 cut(s)	344
XceI	RCATGY	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.