Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Forward (+)

40460412 .. 40462369

Gene Structure 1958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1323600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAAGATCAGGCAATGGAGAGGATTGAAGGAGATGATCACCATCACCAGAGCTCCTCATTTCTTAAGAGGTCTCCCTGTTCTTCTGTTGACAATGGTGATCAGAAACCCCACACGTCATCATTTGACGACGGTGATGGTGTTACTCCTAATAGAAGCACAGCTCAAGGGAAGCATCTAGTAGTCCACGGCTACCACCATCATTTTCCGGCCGCCGCCGGTCATCGTCAGATGATCGGCAGCCTGTTGAAATCATCCCCGTCGTCATCGACTCCGGTGAGACCTTATGTTCGGTCCAGAATGCCTCGGCTTCGTTGGACGCCTGATCTTCACCGCTGTTTTGTGCATGCAGTTGAAAGGCTTGGCGGAGAACAAAGAGCCACTCCAAAGATGGTTTTACAGATCATGAATGTGAAAGGCCTTAACATATCACACGTTAAAAGCCATCTTCAGATGTACAGGAGTATGAAGCATGAGCAAGGCATACAAGCAGCTGCTTTGGCAGCAAAGAAGAATGGTATGTTGCAGGTCTCTGAGTACTCAAACAACTCAAACTTCTTAAAGCCAATCGATATTGCTCAACCTGTTTACCACCAAAAGAAAGACTTGATGAAGAAAATGTACAACCATCGACCCTGCCAAAGCAATGAAACTTGTTACATTGAAGGCCTTGACAGGAACACCAGTCCTCTGGCGAAATGGAAGGATGAAACGAAGCCATTAGTACTACCCTATCAAGCACCAAGTTCTTTCATCGTAGACAATGATCTGCTCAAAAGATGCACTGATAATATTGGACAAGAGAGCAATCATAAAGAATTGGAAGATTTAGGCAGTACCAAAAGCGAATATGATGCAAGAATGTCTCTATCAGTCAACGCGTCATCATCGAAAGCCTCTCGTGAGCTGTTGAGGTTCAGCAAAGCAGCTGGGAATTCAGATGCGAATGATGTCTCTCTTGAGCTCACTCTTGGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

327

Amino Acids

36.5

Weight (kDa)

9.15

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	103 - 154	4.3e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	759
AccII	CGCG	1 cut(s)	881
AciI	CCGC	4 cut(s)	213, 216, 334, 366
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	934
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	320
AfaI	GTAC	6 cut(s)	458, 539, 623, 726, 838, 976
AflII	CTTAAG	1 cut(s)	65
AflIII	ACRYGT	3 cut(s)	114, 433, 879
AgsI	TTSAA	4 cut(s)	29, 250, 356, 665
AjiI	CACGTC	1 cut(s)	117
AluBI	AGCT	6 cut(s)	54, 164, 494, 907, 929, 964
AluI	AGCT	6 cut(s)	54, 164, 494, 907, 929, 964
Alw21I	GWGCWC	2 cut(s)	56, 966
Alw26I	GTCTC	5 cut(s)	78, 274, 535, 870, 958
AoxI	GGCC	3 cut(s)	210, 418, 667
ApeKI	GCWGC	5 cut(s)	240, 491, 494, 503, 926
ApoI	RAATTY	1 cut(s)	934
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	6 cut(s)	32, 38, 110, 146, 289, 323
AvaII	GGWCC	1 cut(s)	294
BanII	GRGCYC	2 cut(s)	56, 966
BarI	GAAGNNNNNNTAC	2 cut(s)	605, 637
BauI	CACGAG	1 cut(s)	900
Bbv12I	GWGCWC	2 cut(s)	56, 966
BbvI	GCAGC	5 cut(s)	252, 481, 503, 515, 938
BccI	CCATC	6 cut(s)	51, 131, 207, 385, 453, 636
BceAI	ACGGC	1 cut(s)	205
BcgI	CGANNNNNNTGC	2 cut(s)	836, 870
BclI	TGATCA	2 cut(s)	37, 100
BcoDI	GTCTC	5 cut(s)	78, 274, 535, 870, 958
BfaI	CTAG	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	7 cut(s)	213, 216, 241, 492, 495, 504, 927
BlsI	GCNGC	7 cut(s)	214, 217, 242, 493, 496, 505, 928
BmcAI	AGTACT	2 cut(s)	539, 726
Bme18I	GGWCC	1 cut(s)	294
BmgBI	CACGTC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	294
BmsI	GCATC	4 cut(s)	184, 770, 844, 931
BpuEI	CTTGAG	2 cut(s)	150, 980
Bsa29I	ATCGAT	1 cut(s)	570
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	320
BsaI	GGTCTC	3 cut(s)	78, 274, 535
BsaJI	CCNNGG	2 cut(s)	187, 305
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	684
Bse3DI	GCAATG	2 cut(s)	21, 652
Bse8I	GATNNNNATC	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	187, 305
BseGI	GGATG	2 cut(s)	254, 712
BseJI	GATNNNNATC	1 cut(s)	42
BseMI	GCAATG	2 cut(s)	21, 652
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	1 cut(s)	684
BseRI	GAGGAG	1 cut(s)	46
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	5 cut(s)	252, 481, 503, 515, 938
BseYI	CCCAGC	1 cut(s)	929
Bsh1236I	CGCG	1 cut(s)	881
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	212, 420, 669
BshVI	ATCGAT	1 cut(s)	570
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	2 cut(s)	56, 966
BsiSI	CCGG	3 cut(s)	209, 219, 275
BsmAI	GTCTC	5 cut(s)	78, 274, 535, 870, 958
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	3 cut(s)	212, 420, 669
Bso31I	GGTCTC	3 cut(s)	78, 274, 535
Bsp1286I	GDGCHC	2 cut(s)	56, 966
Bsp1407I	TGTACA	2 cut(s)	456, 621
Bsp143I	GATC	7 cut(s)	7, 37, 100, 234, 325, 402, 766
BspACI	CCGC	4 cut(s)	213, 216, 334, 366
BspANI	GGCC	3 cut(s)	212, 420, 669
BspCNI	CTCAG	1 cut(s)	526
BspDI	ATCGAT	1 cut(s)	570
BspFNI	CGCG	1 cut(s)	881
BspHI	TCATGA	1 cut(s)	405
BspMI	ACCTGC	1 cut(s)	517
BspTI	CTTAAG	1 cut(s)	65
BspTNI	GGTCTC	3 cut(s)	78, 274, 535
BsrDI	GCAATG	2 cut(s)	21, 652
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	2 cut(s)	456, 621
BsrI	ACTGG	1 cut(s)	684
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	187, 305
BssMI	GATC	7 cut(s)	7, 37, 100, 234, 325, 402, 766
BssNI	GRCGYC	1 cut(s)	320
BssSI	CACGAG	1 cut(s)	900
Bst2BI	CACGAG	1 cut(s)	900
Bst4CI	ACNGT	1 cut(s)	134
BstACI	GRCGYC	1 cut(s)	320
BstAFI	CTTAAG	1 cut(s)	65
BstAUI	TGTACA	2 cut(s)	456, 621
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	534
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	254, 712
BstFNI	CGCG	1 cut(s)	881
BstKTI	GATC	7 cut(s)	10, 40, 103, 237, 328, 405, 769
BstMAI	GTCTC	5 cut(s)	78, 274, 535, 870, 958
BstMBI	GATC	7 cut(s)	7, 37, 100, 234, 325, 402, 766
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 503
BstNSI	RCATGY	1 cut(s)	350
BstUI	CGCG	1 cut(s)	881
BstV1I	GCAGC	5 cut(s)	252, 481, 503, 515, 938
BstXI	CCANNNNNNTGG	1 cut(s)	691
BstZI	CGGCCG	1 cut(s)	210
Bsu15I	ATCGAT	1 cut(s)	570
BsuRI	GGCC	3 cut(s)	212, 420, 669
BsuTUI	ATCGAT	1 cut(s)	570
BtgI	CCRYGG	1 cut(s)	187
BtrI	CACGTC	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	254, 712
BtsIMutI	CAGTG	1 cut(s)	783
BveI	ACCTGC	1 cut(s)	517
Cac8I	GCNNGC	1 cut(s)	348
CciI	TCATGA	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	294
ClaI	ATCGAT	1 cut(s)	570
CseI	GACGC	2 cut(s)	328, 870
Csp6I	GTAC	6 cut(s)	457, 538, 622, 725, 837, 975
CviAII	CATG	3 cut(s)	347, 406, 473
CviQI	GTAC	6 cut(s)	457, 538, 622, 725, 837, 975
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	7 cut(s)	9, 39, 102, 236, 327, 404, 768
DpnII	GATC	7 cut(s)	7, 37, 100, 234, 325, 402, 766
EaeI	YGGCCR	1 cut(s)	210
EagI	CGGCCG	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	381
Ecl136II	GAGCTC	2 cut(s)	54, 964
EclXI	CGGCCG	1 cut(s)	210
Eco147I	AGGCCT	2 cut(s)	420, 669
Eco24I	GRGCYC	2 cut(s)	56, 966
Eco31I	GGTCTC	3 cut(s)	78, 274, 535
Eco47I	GGWCC	1 cut(s)	294
Eco52I	CGGCCG	1 cut(s)	210
Eco53kI	GAGCTC	2 cut(s)	54, 964
Eco57I	CTGAAG	1 cut(s)	434
EcoICRI	GAGCTC	2 cut(s)	54, 964
EcoRI	GAATTC	1 cut(s)	934
EcoT38I	GRGCYC	2 cut(s)	56, 966
FaeI	CATG	3 cut(s)	350, 409, 476
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FatI	CATG	3 cut(s)	346, 405, 472
FbaI	TGATCA	2 cut(s)	37, 100
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	7 cut(s)	213, 216, 241, 492, 495, 504, 927
FokI	GGATG	2 cut(s)	241, 719
FriOI	GRGCYC	2 cut(s)	56, 966
Fsp4HI	GCNGC	7 cut(s)	213, 216, 241, 492, 495, 504, 927
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	7 cut(s)	213, 216, 241, 492, 495, 504, 927
GsaI	CCCAGC	1 cut(s)	933
HaeIII	GGCC	3 cut(s)	212, 420, 669
HapII	CCGG	3 cut(s)	209, 219, 275
HgaI	GACGC	2 cut(s)	328, 870
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	3 cut(s)	350, 409, 476
HincII	GTYRAC	2 cut(s)	91, 877
HindII	GTYRAC	2 cut(s)	91, 877
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	3 cut(s)	209, 219, 275
HphI	GGTGA	6 cut(s)	32, 38, 110, 146, 289, 323
Hpy166II	GTNNAC	5 cut(s)	91, 187, 589, 760, 877
Hpy188I	TCNGA	5 cut(s)	105, 231, 453, 535, 940
Hpy188III	TCNNGA	4 cut(s)	297, 406, 902, 959
Hpy8I	GTNNAC	5 cut(s)	91, 187, 589, 760, 877
Hpy99I	CGWCG	2 cut(s)	134, 265
HpyAV	CCTTC	3 cut(s)	23, 659, 697
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	2 cut(s)	116, 435
HpyCH4V	TGCA	5 cut(s)	346, 350, 526, 783, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 503
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	2 cut(s)	116, 435
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	3 cut(s)	350, 409, 476
Ksp22I	TGATCA	2 cut(s)	37, 100
Kzo9I	GATC	7 cut(s)	7, 37, 100, 234, 325, 402, 766
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	5 cut(s)	252, 481, 503, 515, 938
LweI	GCATC	4 cut(s)	184, 770, 844, 931
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	2 cut(s)	116, 435
MaeIII	GTNAC	2 cut(s)	142, 656
MalI	GATC	7 cut(s)	9, 39, 102, 236, 327, 404, 768
MboI	GATC	7 cut(s)	7, 37, 100, 234, 325, 402, 766
MboII	GAAGA	6 cut(s)	75, 320, 440, 523, 625, 836
MhlI	GDGCHC	2 cut(s)	56, 966
MluCI	AATT	2 cut(s)	818, 934
MluI	ACGCGT	1 cut(s)	879
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	7 cut(s)	15, 63, 67, 315, 699, 906, 907
MseI	TTAA	5 cut(s)	66, 423, 438, 560, 979
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	3 cut(s)	336, 494, 929
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	3 cut(s)	209, 219, 275
Mva1269I	GAATGC	1 cut(s)	306
MvnI	CGCG	1 cut(s)	881
MwoI	GCNNNNNNNGC	2 cut(s)	500, 503
NdeII	GATC	7 cut(s)	7, 37, 100, 234, 325, 402, 766
NlaIII	CATG	3 cut(s)	350, 409, 476
NmeAIII	GCCGAG	1 cut(s)	286
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PagI	TCATGA	1 cut(s)	405
PceI	AGGCCT	2 cut(s)	420, 669
PctI	GAATGC	1 cut(s)	306
PkrI	GCNGC	7 cut(s)	214, 217, 242, 493, 496, 505, 928
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp124BI	GAGCTC	2 cut(s)	56, 966
PspFI	CCCAGC	1 cut(s)	929
PspPI	GGNCC	1 cut(s)	294
PvuII	CAGCTG	2 cut(s)	494, 929
RsaI	GTAC	6 cut(s)	458, 539, 623, 726, 838, 976
RsaNI	GTAC	6 cut(s)	457, 538, 622, 725, 837, 975
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	2 cut(s)	56, 966
SaqAI	TTAA	5 cut(s)	66, 423, 438, 560, 979
SatI	GCNGC	7 cut(s)	213, 216, 241, 492, 495, 504, 927
Sau3AI	GATC	7 cut(s)	7, 37, 100, 234, 325, 402, 766
Sau96I	GGNCC	1 cut(s)	294
ScaI	AGTACT	2 cut(s)	539, 726
SchI	GAGTC	1 cut(s)	265
SduI	GDGCHC	2 cut(s)	56, 966
SfaNI	GCATC	4 cut(s)	184, 770, 844, 931
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	3 cut(s)	65, 165, 959
SmoI	CTYRAG	3 cut(s)	65, 165, 959
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	2 cut(s)	818, 934
SseBI	AGGCCT	2 cut(s)	420, 669
SsiI	CCGC	4 cut(s)	213, 216, 334, 366
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	2 cut(s)	56, 966
StuI	AGGCCT	2 cut(s)	420, 669
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	2 cut(s)	119, 438
TaqI	TCGA	4 cut(s)	269, 570, 631, 890
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	818, 934
TatI	WGTACW	4 cut(s)	456, 537, 621, 724
TauI	GCSGC	2 cut(s)	215, 218
Tru1I	TTAA	5 cut(s)	66, 423, 438, 560, 979
Tru9I	TTAA	5 cut(s)	66, 423, 438, 560, 979
TscAI	CASTG	1 cut(s)	790
TseI	GCWGC	5 cut(s)	240, 491, 494, 503, 926
TspDTI	ATGAA	7 cut(s)	17, 422, 482, 626, 663, 723, 742
TspRI	CASTG	1 cut(s)	790
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	1 cut(s)	934
XceI	RCATGY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	759
XspI	CTAG	1 cut(s)	179
ZrmI	AGTACT	2 cut(s)	539, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.