Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Forward (+)

28374492 .. 28376338

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAGAGAATTGAAGGAGATGATCACCATCACCAGAGCTCCTCATTTCTTAAGAGGTCTCCCTCTTCTTCTGTTGACAATGGTGATCAGAAACCCCACACGTCATCATTTGACGGCGGTGATGGTGTTACTCCTAATAGAAGCACAGCTCAAGGGAAGCATCTAGTAGTCCACGGCTACCACCATCATTTTCCGGCCGCCGCCCGTCATCGTCAGATGATCGGCAGCCTGTCGAAATCATCCCTGTCATCATCGACTCCGGTGAGACCTTATGTTCGGTCCAGAATGCCTCGGCTTCGTTGGACGCCTGATCTTCACCGCTGTTTTGTGCATGCAGTTGAAAGGCTTGGCGGAGAACAAACAGCTGCTTTGGCAGCACAGAAGAATGGTATGTTGCAGGTCTCTGAGCACTCAAACAACTCAAACTTCTTAAAGCCAATCAATTTTGCTCAACCTGTTTACATTGAAGGCCTTGATACCAAGAACACCAGTCCTCTGGCGAAAAGGAAGGATGAAACGAAGCCATTAGTACTACCCTATCAAGCACCAAGTTCTTTCATCGTAGACAATGATCTACTCAAAAGATGCACTGATAATATTGGACAAGTACTCTCTCTCTCCCCCTCCTATGACATTCTGGCTCTGAACAGTTCTTTAATATTCCATTCCATATGTCTGAATTTTCAGGAGAGCAATCATAAGGAATTGGAAGATTTAGGCAGTACCAAAAGCGAATATGATGCAAGAATAATGTCTCTATCACTCAACGCGTCATCATCGAAAGCCTCTCGTGAGCTGTTGAGGTTCAGCAAAGCAGCTGGGAATTCAGATGCGAATGATGTCTCTCTTGAGCTCAGTCTTGGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

290

Amino Acids

31.83

Weight (kDa)

8.39

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	564
AccII	CGCG	1 cut(s)	770
AciI	CCGC	5 cut(s)	117, 198, 201, 319, 351
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	2 cut(s)	679, 823
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	4 cut(s)	531, 609, 724, 865
AflII	CTTAAG	1 cut(s)	50
AflIII	ACRYGT	2 cut(s)	99, 768
AgsI	TTSAA	3 cut(s)	14, 341, 467
AjiI	CACGTC	1 cut(s)	102
AluBI	AGCT	6 cut(s)	39, 149, 365, 796, 818, 853
AluI	AGCT	6 cut(s)	39, 149, 365, 796, 818, 853
Alw21I	GWGCWC	3 cut(s)	41, 411, 855
Alw26I	GTCTC	5 cut(s)	63, 259, 406, 759, 847
AoxI	GGCC	2 cut(s)	195, 469
ApeKI	GCWGC	4 cut(s)	225, 365, 374, 815
ApoI	RAATTY	2 cut(s)	679, 823
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	6 cut(s)	17, 23, 95, 131, 274, 308
AvaII	GGWCC	1 cut(s)	279
BanII	GRGCYC	2 cut(s)	41, 855
BauI	CACGAG	1 cut(s)	789
Bbv12I	GWGCWC	3 cut(s)	41, 411, 855
BbvI	GCAGC	4 cut(s)	237, 352, 386, 827
BccI	CCATC	3 cut(s)	36, 116, 192
BceAI	ACGGC	2 cut(s)	130, 190
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BclI	TGATCA	2 cut(s)	22, 85
BcoDI	GTCTC	5 cut(s)	63, 259, 406, 759, 847
BfaI	CTAG	1 cut(s)	164
BfrI	CTTAAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	6 cut(s)	198, 201, 226, 366, 375, 816
BlsI	GCNGC	6 cut(s)	199, 202, 227, 367, 376, 817
BmcAI	AGTACT	2 cut(s)	531, 609
Bme18I	GGWCC	1 cut(s)	279
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	279
BmsI	GCATC	4 cut(s)	169, 575, 730, 820
BpuEI	CTTGAG	2 cut(s)	135, 869
BsaBI	GATNNNNATC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	305
BsaI	GGTCTC	3 cut(s)	63, 259, 406
BsaJI	CCNNGG	2 cut(s)	172, 290
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bse1I	ACTGG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	172, 290
BseGI	GGATG	2 cut(s)	239, 517
BseJI	GATNNNNATC	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	396, 868
BseNI	ACTGG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	4 cut(s)	237, 352, 386, 827
BseYI	CCCAGC	1 cut(s)	818
Bsh1236I	CGCG	1 cut(s)	770
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	197, 471
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	3 cut(s)	41, 411, 855
BsiSI	CCGG	2 cut(s)	194, 260
BsmAI	GTCTC	5 cut(s)	63, 259, 406, 759, 847
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	2 cut(s)	197, 471
Bso31I	GGTCTC	3 cut(s)	63, 259, 406
Bsp1286I	GDGCHC	3 cut(s)	41, 411, 855
Bsp143I	GATC	5 cut(s)	22, 85, 219, 310, 571
BspACI	CCGC	5 cut(s)	117, 198, 201, 319, 351
BspANI	GGCC	2 cut(s)	197, 471
BspCNI	CTCAG	2 cut(s)	397, 867
BspFNI	CGCG	1 cut(s)	770
BspMI	ACCTGC	1 cut(s)	388
BspTI	CTTAAG	1 cut(s)	50
BspTNI	GGTCTC	3 cut(s)	63, 259, 406
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	2 cut(s)	172, 290
BssMI	GATC	5 cut(s)	22, 85, 219, 310, 571
BssNI	GRCGYC	1 cut(s)	305
BssSI	CACGAG	1 cut(s)	789
Bst2BI	CACGAG	1 cut(s)	789
Bst4CI	ACNGT	1 cut(s)	650
Bst6I	CTCTTC	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	305
BstAFI	CTTAAG	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	405, 854
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	239, 517
BstFNI	CGCG	1 cut(s)	770
BstKTI	GATC	5 cut(s)	25, 88, 222, 313, 574
BstMAI	GTCTC	5 cut(s)	63, 259, 406, 759, 847
BstMBI	GATC	5 cut(s)	22, 85, 219, 310, 571
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 374
BstNSI	RCATGY	1 cut(s)	335
BstUI	CGCG	1 cut(s)	770
BstV1I	GCAGC	4 cut(s)	237, 352, 386, 827
BstXI	CCANNNNNNTGG	1 cut(s)	496
BstZI	CGGCCG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	197, 471
BtgI	CCRYGG	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	239, 517
BtsIMutI	CAGTG	1 cut(s)	588
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	279
CseI	GACGC	2 cut(s)	313, 759
Csp6I	GTAC	4 cut(s)	530, 608, 723, 864
CviAII	CATG	1 cut(s)	332
CviQI	GTAC	4 cut(s)	530, 608, 723, 864
DdeI	CTNAG	2 cut(s)	405, 854
DpnI	GATC	5 cut(s)	24, 87, 221, 312, 573
DpnII	GATC	5 cut(s)	22, 85, 219, 310, 571
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	366
Ecl136II	GAGCTC	2 cut(s)	39, 853
EclXI	CGGCCG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	471
Eco24I	GRGCYC	2 cut(s)	41, 855
Eco31I	GGTCTC	3 cut(s)	63, 259, 406
Eco47I	GGWCC	1 cut(s)	279
Eco52I	CGGCCG	1 cut(s)	195
Eco53kI	GAGCTC	2 cut(s)	39, 853
EcoICRI	GAGCTC	2 cut(s)	39, 853
EcoRI	GAATTC	1 cut(s)	823
EcoT38I	GRGCYC	2 cut(s)	41, 855
FaeI	CATG	1 cut(s)	335
FaiI	YATR	8 cut(s)	273, 333, 392, 630, 671, 673, 699, 738
FatI	CATG	1 cut(s)	331
FauNDI	CATATG	1 cut(s)	671
FbaI	TGATCA	2 cut(s)	22, 85
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	6 cut(s)	198, 201, 226, 366, 375, 816
FokI	GGATG	2 cut(s)	226, 524
FriOI	GRGCYC	2 cut(s)	41, 855
Fsp4HI	GCNGC	6 cut(s)	198, 201, 226, 366, 375, 816
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	6 cut(s)	198, 201, 226, 366, 375, 816
GsaI	CCCAGC	1 cut(s)	822
HaeIII	GGCC	2 cut(s)	197, 471
HapII	CCGG	2 cut(s)	194, 260
HgaI	GACGC	2 cut(s)	313, 759
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	1 cut(s)	335
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	2 cut(s)	194, 260
HphI	GGTGA	6 cut(s)	17, 23, 95, 131, 274, 308
Hpy166II	GTNNAC	4 cut(s)	76, 172, 460, 565
Hpy188I	TCNGA	6 cut(s)	90, 216, 406, 645, 678, 829
Hpy188III	TCNNGA	4 cut(s)	282, 686, 791, 848
Hpy8I	GTNNAC	4 cut(s)	76, 172, 460, 565
HpyAV	CCTTC	3 cut(s)	8, 461, 502
HpyCH4III	ACNGT	1 cut(s)	650
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	5 cut(s)	331, 335, 397, 588, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 374
HpyF3I	CTNAG	2 cut(s)	405, 854
HpySE526I	ACGT	1 cut(s)	101
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	335
Ksp22I	TGATCA	2 cut(s)	22, 85
Kzo9I	GATC	5 cut(s)	22, 85, 219, 310, 571
LmnI	GCTCC	1 cut(s)	44
Lsp1109I	GCAGC	4 cut(s)	237, 352, 386, 827
LweI	GCATC	4 cut(s)	169, 575, 730, 820
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	5 cut(s)	24, 87, 221, 312, 573
MboI	GATC	5 cut(s)	22, 85, 219, 310, 571
MboII	GAAGA	5 cut(s)	57, 60, 305, 394, 722
MhlI	GDGCHC	3 cut(s)	41, 411, 855
MluCI	AATT	5 cut(s)	9, 442, 679, 704, 823
MluI	ACGCGT	1 cut(s)	768
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	8 cut(s)	48, 52, 73, 300, 504, 634, 795, 796
MseI	TTAA	4 cut(s)	51, 431, 656, 868
MspA1I	CMGCKG	3 cut(s)	321, 365, 818
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	2 cut(s)	194, 260
Mva1269I	GAATGC	1 cut(s)	291
MvnI	CGCG	1 cut(s)	770
MwoI	GCNNNNNNNGC	2 cut(s)	371, 374
NdeI	CATATG	1 cut(s)	671
NdeII	GATC	5 cut(s)	22, 85, 219, 310, 571
NlaIII	CATG	1 cut(s)	335
NmeAIII	GCCGAG	1 cut(s)	271
NspI	RCATGY	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	471
PctI	GAATGC	1 cut(s)	291
PkrI	GCNGC	6 cut(s)	199, 202, 227, 367, 376, 817
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp124BI	GAGCTC	2 cut(s)	41, 855
PspFI	CCCAGC	1 cut(s)	818
PspPI	GGNCC	1 cut(s)	279
PvuII	CAGCTG	2 cut(s)	365, 818
RsaI	GTAC	4 cut(s)	531, 609, 724, 865
RsaNI	GTAC	4 cut(s)	530, 608, 723, 864
SacI	GAGCTC	2 cut(s)	41, 855
SaqAI	TTAA	4 cut(s)	51, 431, 656, 868
SatI	GCNGC	6 cut(s)	198, 201, 226, 366, 375, 816
Sau3AI	GATC	5 cut(s)	22, 85, 219, 310, 571
Sau96I	GGNCC	1 cut(s)	279
ScaI	AGTACT	2 cut(s)	531, 609
SchI	GAGTC	1 cut(s)	250
SduI	GDGCHC	3 cut(s)	41, 411, 855
SfaNI	GCATC	4 cut(s)	169, 575, 730, 820
SinI	GGWCC	1 cut(s)	279
SmlI	CTYRAG	3 cut(s)	50, 150, 848
SmoI	CTYRAG	3 cut(s)	50, 150, 848
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	5 cut(s)	9, 442, 679, 704, 823
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	5 cut(s)	117, 198, 201, 319, 351
SspI	AATATT	2 cut(s)	598, 660
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	2 cut(s)	41, 855
StuI	AGGCCT	1 cut(s)	471
TaaI	ACNGT	1 cut(s)	650
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	233, 254, 779
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	5 cut(s)	9, 442, 679, 704, 823
TatI	WGTACW	2 cut(s)	529, 607
TauI	GCSGC	2 cut(s)	200, 203
Tru1I	TTAA	4 cut(s)	51, 431, 656, 868
Tru9I	TTAA	4 cut(s)	51, 431, 656, 868
TscAI	CASTG	1 cut(s)	595
TseI	GCWGC	4 cut(s)	225, 365, 374, 815
TspDTI	ATGAA	2 cut(s)	528, 547
TspRI	CASTG	1 cut(s)	595
Vha464I	CTTAAG	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	279
XapI	RAATTY	2 cut(s)	679, 823
XceI	RCATGY	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	564
XspI	CTAG	1 cut(s)	164
ZrmI	AGTACT	2 cut(s)	531, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.