Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Reverse (-)

861570 .. 863251

Gene Structure 1682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G018700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAAGAGCTCTCTCAAGGGGTCTCCATCTTCCTCTGTTGACAATGGCGATGATGACGATCATCAAGCTGGACAGAGGTTGGTATTGTACCATCATTTGCTAGCTGCCGCTGATCATCATCAGAGAAGCGGCCTGCAGAAATCGCCGTCGTGGTCGTCAACTCCGGTGAGACCTTATGTTCGCTCCAAAATGCCTCGCCTTCGTTGGACACCTGATCTTCACCACTGTTTTGTGCATGCAGTCAAAAGGCTTGGGGGCGAACAAAGAGCTACTCCAAAGATGGTTTTACAGATCATGAATGTGAAAGGCCTTACCATATCTCACGTTAAAAGCCATCTTCAGATGTACAGGAGCATGAAGCATGAACAAGGCATCCAAGCAGCGGCTATGGCAGCAAAGAAGAATGGTATGTTCCAGGCCTTGGAGCACCCAAACAACTCAAACTTATTATTGAAACCAATCAATAGCAATCAACCTCGTTATTTCCAAAACAACGATGGGATGCAAAACATGTACAACTATGGACCCTGCCAAGGCAATCAAACTTGTTACATTGAACAGCTTGATCTCAACACTACCAGCCCACTGCCAAAATGGAAAGATGAGAAGAAGCAAGCAATGTGGATTGAGAAAAAAGTGACGAGGGAGCAGAATCCAAATTCCTTCATCATATTCAAGGATCTACTCAAAAGATGCACTGATGCAAAAGAGAGCAATGATCAAGGAAAAGCTGTGTCGCTAGTGAGTGCAGGTTGCAAGAGCAATCATAAAGAATTTGAAGATTTATTATTATGTGAAGAAAGTGAAAGTAGCATGAGAGTAGTTTCTAATAATGATGCAAGAATGTCTCTATCACTCAACTCGTCACCGAAAGCTTCTCATGAGCTGTTGAGGCTCAGCAAAGCTGCTGGGAATTCAGATATGAATGATGTCTCTCTTGAGCTTACTCTCGGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

320

Amino Acids

35.87

Weight (kDa)

9.18

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	740
AccB7I	CCANNNNNTGG	1 cut(s)	421
AciI	CCGC	3 cut(s)	108, 129, 383
AclWI	GGATC	1 cut(s)	687
AcsI	RAATTY	3 cut(s)	658, 773, 913
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	4 cut(s)	89, 347, 515, 955
AfiI	CCNNNNNNNGG	3 cut(s)	382, 421, 533
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	4 cut(s)	454, 557, 676, 779
AjnI	CCWGG	1 cut(s)	414
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
Alw21I	GWGCWC	2 cut(s)	11, 429
Alw26I	GTCTC	4 cut(s)	27, 163, 852, 937
AlwI	GGATC	1 cut(s)	687
AoxI	GGCC	3 cut(s)	130, 307, 417
ApeKI	GCWGC	4 cut(s)	104, 380, 392, 905
ApoI	RAATTY	3 cut(s)	658, 773, 913
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	3 cut(s)	178, 212, 858
AsuNHI	GCTAGC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	11, 429
BbvI	GCAGC	4 cut(s)	91, 392, 404, 892
BccI	CCATC	5 cut(s)	34, 99, 274, 342, 491
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	416
BclI	TGATCA	2 cut(s)	112, 718
BcoDI	GTCTC	4 cut(s)	27, 163, 852, 937
BfaI	CTAG	2 cut(s)	101, 740
BfmI	CTRYAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	740
BisI	GCNGC	7 cut(s)	105, 108, 130, 381, 384, 393, 906
BlpI	GCTNAGC	1 cut(s)	896
BlsI	GCNGC	7 cut(s)	106, 109, 131, 382, 385, 394, 907
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	5 cut(s)	381, 492, 683, 691, 826
BmtI	GCTAGC	1 cut(s)	104
Bpu1102I	GCTNAGC	1 cut(s)	896
BpuEI	CTTGAG	1 cut(s)	959
BsaBI	GATNNNNATC	2 cut(s)	57, 117
BsaI	GGTCTC	2 cut(s)	27, 163
BsaJI	CCNNGG	2 cut(s)	420, 532
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	3 cut(s)	382, 421, 533
Bse3DI	GCAATG	2 cut(s)	624, 721
Bse8I	GATNNNNATC	2 cut(s)	57, 117
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	420, 532
BseGI	GGATG	2 cut(s)	372, 507
BseJI	GATNNNNATC	2 cut(s)	57, 117
BseLI	CCNNNNNNNGG	3 cut(s)	382, 421, 533
BseMI	GCAATG	2 cut(s)	624, 721
BseMII	CTCAG	1 cut(s)	910
BseXI	GCAGC	4 cut(s)	91, 392, 404, 892
BseYI	CCCAGC	1 cut(s)	908
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	3 cut(s)	132, 309, 419
BsiHKAI	GWGCWC	2 cut(s)	11, 429
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	3 cut(s)	382, 421, 533
BsmAI	GTCTC	4 cut(s)	27, 163, 852, 937
BsnI	GGCC	3 cut(s)	132, 309, 419
Bso31I	GGTCTC	2 cut(s)	27, 163
Bsp1286I	GDGCHC	2 cut(s)	11, 429
Bsp1407I	TGTACA	2 cut(s)	345, 513
Bsp143I	GATC	7 cut(s)	58, 112, 214, 291, 565, 679, 718
Bsp1720I	GCTNAGC	1 cut(s)	896
BspACI	CCGC	3 cut(s)	108, 129, 383
BspANI	GGCC	3 cut(s)	132, 309, 419
BspCNI	CTCAG	1 cut(s)	909
BspHI	TCATGA	2 cut(s)	294, 880
BspLI	GGNNCC	1 cut(s)	526
BspMAI	CTGCAG	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	740
BspOI	GCTAGC	1 cut(s)	104
BspPI	GGATC	1 cut(s)	687
BspTNI	GGTCTC	2 cut(s)	27, 163
BsrDI	GCAATG	2 cut(s)	624, 721
BsrGI	TGTACA	2 cut(s)	345, 513
BssECI	CCNNGG	2 cut(s)	420, 532
BssMI	GATC	7 cut(s)	58, 112, 214, 291, 565, 679, 718
BssT1I	CCWWGG	2 cut(s)	420, 532
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	227
BstAUI	TGTACA	2 cut(s)	345, 513
BstC8I	GCNNGC	4 cut(s)	102, 134, 237, 615
BstDEI	CTNAG	2 cut(s)	896, 957
BstF5I	GGATG	2 cut(s)	372, 507
BstKTI	GATC	7 cut(s)	61, 115, 217, 294, 568, 682, 721
BstMAI	GTCTC	4 cut(s)	27, 163, 852, 937
BstMBI	GATC	7 cut(s)	58, 112, 214, 291, 565, 679, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 389, 392, 892
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	2 cut(s)	239, 514
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	91, 392, 404, 892
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BsuRI	GGCC	3 cut(s)	132, 309, 419
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	372, 507
BtsI	GCAGTG	1 cut(s)	584
BtsIMutI	CAGTG	3 cut(s)	223, 584, 696
BveI	ACCTGC	1 cut(s)	740
Cac8I	GCNNGC	4 cut(s)	102, 134, 237, 615
CciI	TCATGA	2 cut(s)	294, 880
Cfr13I	GGNCC	1 cut(s)	524
Csp6I	GTAC	4 cut(s)	88, 346, 514, 954
CspCI	CAANNNNNGTGG	2 cut(s)	602, 637
CviAII	CATG	7 cut(s)	236, 295, 355, 362, 511, 814, 881
CviQI	GTAC	4 cut(s)	88, 346, 514, 954
DdeI	CTNAG	2 cut(s)	896, 957
DpnI	GATC	7 cut(s)	60, 114, 216, 293, 567, 681, 720
DpnII	GATC	7 cut(s)	58, 112, 214, 291, 565, 679, 718
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	420, 532
Eco147I	AGGCCT	2 cut(s)	309, 419
Eco24I	GRGCYC	1 cut(s)	11
Eco31I	GGTCTC	2 cut(s)	27, 163
Eco47I	GGWCC	1 cut(s)	524
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	420, 532
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	2 cut(s)	420, 532
FaeI	CATG	7 cut(s)	239, 298, 358, 365, 514, 817, 884
FatI	CATG	7 cut(s)	235, 294, 354, 361, 510, 813, 880
FbaI	TGATCA	2 cut(s)	112, 718
Fnu4HI	GCNGC	7 cut(s)	105, 108, 130, 381, 384, 393, 906
FokI	GGATG	2 cut(s)	359, 514
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	7 cut(s)	105, 108, 130, 381, 384, 393, 906
FspBI	CTAG	2 cut(s)	101, 740
GluI	GCNGC	7 cut(s)	105, 108, 130, 381, 384, 393, 906
GsaI	CCCAGC	1 cut(s)	912
HaeIII	GGCC	3 cut(s)	132, 309, 419
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	7 cut(s)	239, 298, 358, 365, 514, 817, 884
HincII	GTYRAC	2 cut(s)	40, 159
HindII	GTYRAC	2 cut(s)	40, 159
HindIII	AAGCTT	1 cut(s)	873
HinfI	GANTC	1 cut(s)	652
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	3 cut(s)	178, 212, 858
Hpy166II	GTNNAC	2 cut(s)	40, 159
Hpy188I	TCNGA	3 cut(s)	123, 342, 919
Hpy188III	TCNNGA	3 cut(s)	295, 881, 938
Hpy8I	GTNNAC	2 cut(s)	40, 159
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	209, 673
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	9 cut(s)	136, 235, 239, 505, 696, 704, 749, 756, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 389, 392, 892
HpyF3I	CTNAG	2 cut(s)	896, 957
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	7 cut(s)	239, 298, 358, 365, 514, 817, 884
Ksp22I	TGATCA	2 cut(s)	112, 718
Kzo9I	GATC	7 cut(s)	58, 112, 214, 291, 565, 679, 718
LmnI	GCTCC	4 cut(s)	188, 351, 424, 646
Lsp1109I	GCAGC	4 cut(s)	91, 392, 404, 892
LweI	GCATC	5 cut(s)	381, 492, 683, 691, 826
MaeI	CTAG	2 cut(s)	101, 740
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	3 cut(s)	548, 637, 864
MalI	GATC	7 cut(s)	60, 114, 216, 293, 567, 681, 720
MboI	GATC	7 cut(s)	58, 112, 214, 291, 565, 679, 718
MboII	GAAGA	8 cut(s)	16, 21, 209, 329, 412, 619, 791, 809
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	2 cut(s)	11, 429
MluCI	AATT	3 cut(s)	658, 773, 913
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	6 cut(s)	43, 69, 204, 486, 636, 885
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	2 cut(s)	110, 383
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	142, 389, 392, 892
NdeII	GATC	7 cut(s)	58, 112, 214, 291, 565, 679, 718
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	7 cut(s)	239, 298, 358, 365, 514, 817, 884
NlaIV	GGNNCC	1 cut(s)	526
NmuCI	GTSAC	2 cut(s)	637, 864
NspI	RCATGY	2 cut(s)	239, 514
PaeI	GCATGC	1 cut(s)	239
PagI	TCATGA	2 cut(s)	294, 880
PceI	AGGCCT	2 cut(s)	309, 419
PciI	ACATGT	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	652
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	7 cut(s)	106, 109, 131, 382, 385, 394, 907
PscI	ACATGT	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	908
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	526
PspPI	GGNCC	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	679
RsaI	GTAC	4 cut(s)	89, 347, 515, 955
RsaNI	GTAC	4 cut(s)	88, 346, 514, 954
RseI	CAYNNNNRTG	1 cut(s)	299
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	7 cut(s)	105, 108, 130, 381, 384, 393, 906
Sau3AI	GATC	7 cut(s)	58, 112, 214, 291, 565, 679, 718
Sau96I	GGNCC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	2 cut(s)	11, 429
SfaNI	GCATC	5 cut(s)	381, 492, 683, 691, 826
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	2 cut(s)	14, 938
SmoI	CTYRAG	2 cut(s)	14, 938
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	3 cut(s)	658, 773, 913
SseBI	AGGCCT	2 cut(s)	309, 419
SsiI	CCGC	3 cut(s)	108, 129, 383
SspMI	CTAG	2 cut(s)	101, 740
SstI	GAGCTC	1 cut(s)	11
StuI	AGGCCT	2 cut(s)	309, 419
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	420, 532
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	327
TasI	AATT	3 cut(s)	658, 773, 913
TatI	WGTACW	2 cut(s)	345, 513
TauI	GCSGC	3 cut(s)	110, 132, 386
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	3 cut(s)	230, 591, 703
TseFI	GTSAC	2 cut(s)	637, 864
TseI	GCWGC	4 cut(s)	104, 380, 392, 905
Tsp45I	GTSAC	2 cut(s)	637, 864
TspDTI	ATGAA	6 cut(s)	17, 311, 371, 378, 655, 938
TspRI	CASTG	3 cut(s)	230, 591, 703
Van91I	CCANNNNNTGG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	3 cut(s)	658, 773, 913
XceI	RCATGY	2 cut(s)	239, 514
XcmI	CCANNNNNNNNNTGG	2 cut(s)	494, 591
XspI	CTAG	2 cut(s)	101, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.