AT4G04605
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001787
Physical Location & Seq
Reverse (-)
2316471 .. 2318152
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04605.1

Sequence Viewer

Length: 663 bp
ATGAAGAACCCAATCGTTAGATCTTATGTTAGATCAAAAGTGCCGCGGTTGCGGTGGAACTCTGATCTTCATAACTCTTTTGTTCAAGCTGTTGAACAACTAGGTGGAGAAAATAGAGCAACTCCTAAAATGGTTTTACAGTTAATGGATGTGAGAGGACTCACAATATCACATGTGAAGAGTCATCTCCAGATGTATAGGGGCATGAAGCTTGAAGAATCCATGCAAGAAGAGATATTAGCAAAGAGAAGTGTTAGAGTGACAGGACAAGTAACTTGGTGGCAATTTCAACATTACCTTCATAACTACCAACGTCTTCAGGGCAATGCCAACTTTTTCCAAAATCAACAAAGGCAAGAAGCGGGAATATATGAAAAAATTATAACATTTGGACAATCAAGTAATGAAACTAAGGAAGTACCAAGTGACTACTTTACCTGCAAGTCTCTCTATGAAACATCCAGAGCTCCACAAAATAAAACGAGAGATGATGATGAAAATGGTGAAGCTGTTGTTGCTATTGAAGATGATGGTAATGTTGTTGATGAACATGATGATGAGGATGCTAATGATGATGAGGTTACTTTGTCACTAAACTCAATAAAAGTTTCAAAAAGTGAAGAAGAATTGTCCCTTGAGCTCACTCTTGGTCTCAAAGCATAA

Protein Analysis

220

Amino Acids

25.32

Weight (kDa)

5.23

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 67 2.7e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
Acc36I ACCTGC 1 cut(s) 446
AccII CGCG 1 cut(s) 46
AciI CCGC 4 cut(s) 44, 46, 52, 362
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 1 cut(s) 420
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 6 cut(s) 86, 95, 215, 290, 524, 612
AluBI AGCT 5 cut(s) 89, 211, 467, 509, 640
AluI AGCT 5 cut(s) 89, 211, 467, 509, 640
Alw21I GWGCWC 2 cut(s) 469, 642
Alw26I GTCTC 2 cut(s) 450, 656
AsuHPI GGTGA 1 cut(s) 515
BanII GRGCYC 2 cut(s) 469, 642
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 2 cut(s) 469, 642
BccI CCATC 1 cut(s) 524
BcoDI GTCTC 2 cut(s) 450, 656
BfaI CTAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 446
BglII AGATCT 1 cut(s) 20
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BmsI GCATC 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 656
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 3 cut(s) 154, 458, 568
BseMI GCAATG 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 469, 642
BslFI GGGAC 1 cut(s) 616
BsmAI GTCTC 2 cut(s) 450, 656
BsmFI GGGAC 1 cut(s) 616
Bso31I GGTCTC 1 cut(s) 656
Bsp1286I GDGCHC 2 cut(s) 469, 642
Bsp143I GATC 3 cut(s) 20, 32, 64
BspACI CCGC 4 cut(s) 44, 46, 52, 362
BspFNI CGCG 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 656
BsrDI GCAATG 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 3 cut(s) 20, 32, 64
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 2 cut(s) 173, 225
BstDEI CTNAG 1 cut(s) 411
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 3 cut(s) 154, 458, 568
BstFNI CGCG 1 cut(s) 46
BstKTI GATC 3 cut(s) 23, 35, 67
BstMAI GTCTC 2 cut(s) 450, 656
BstMBI GATC 3 cut(s) 20, 32, 64
BstMWI GCNNNNNNNGC 2 cut(s) 49, 515
BstNSI RCATGY 1 cut(s) 176
BstUI CGCG 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 3 cut(s) 154, 458, 568
BveI ACCTGC 1 cut(s) 446
Cfr42I CCGCGG 1 cut(s) 47
Csp6I GTAC 1 cut(s) 419
CviAII CATG 4 cut(s) 173, 205, 223, 551
CviJI RGCY 5 cut(s) 89, 211, 467, 509, 640
CviKI_1 RGCY 5 cut(s) 89, 211, 467, 509, 640
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 1 cut(s) 411
DpnI GATC 3 cut(s) 22, 34, 66
DpnII GATC 3 cut(s) 20, 32, 64
Eam1104I CTCTTC 2 cut(s) 173, 225
EarI CTCTTC 2 cut(s) 173, 225
Ecl136II GAGCTC 2 cut(s) 467, 640
Eco24I GRGCYC 2 cut(s) 469, 642
Eco31I GGTCTC 1 cut(s) 656
Eco53kI GAGCTC 2 cut(s) 467, 640
Eco57I CTGAAG 1 cut(s) 302
EcoICRI GAGCTC 2 cut(s) 467, 640
EcoT38I GRGCYC 2 cut(s) 469, 642
FaeI CATG 4 cut(s) 176, 208, 226, 554
FaqI GGGAC 1 cut(s) 616
FatI CATG 4 cut(s) 172, 204, 222, 550
FauI CCCGC 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 3 cut(s) 161, 445, 575
FriOI GRGCYC 2 cut(s) 469, 642
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 1 cut(s) 101
GluI GCNGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 173
Hin1II CATG 4 cut(s) 176, 208, 226, 554
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 3 cut(s) 159, 181, 218
HphI GGTGA 1 cut(s) 515
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 190, 462
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 2 cut(s) 226, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 515
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 4 cut(s) 176, 208, 226, 554
KspI CCGCGG 1 cut(s) 47
Kzo9I GATC 3 cut(s) 20, 32, 64
LmnI GCTCC 1 cut(s) 472
LpnPI CCDG 5 cut(s) 203, 249, 305, 451, 475
LweI GCATC 1 cut(s) 553
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 5 cut(s) 259, 271, 425, 580, 588
MalI GATC 3 cut(s) 22, 34, 66
MboI GATC 3 cut(s) 20, 32, 64
MboII GAAGA 9 cut(s) 16, 59, 190, 227, 242, 308, 536, 632, 635
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 469, 642
MluCI AATT 3 cut(s) 284, 378, 626
MlyI GAGTC 2 cut(s) 153, 190
MnlI CCTC 3 cut(s) 149, 553, 571
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 46
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 49, 515
NdeII GATC 3 cut(s) 20, 32, 64
NlaIII CATG 4 cut(s) 176, 208, 226, 554
NmuCI GTSAC 3 cut(s) 259, 425, 588
NspI RCATGY 1 cut(s) 176
PciI ACATGT 1 cut(s) 172
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 2 cut(s) 153, 189
PpsI GAGTC 2 cut(s) 153, 189
PscI ACATGT 1 cut(s) 172
PsiI TTATAA 1 cut(s) 383
Psp124BI GAGCTC 2 cut(s) 469, 642
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 2 cut(s) 469, 642
SacII CCGCGG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 3 cut(s) 20, 32, 64
SchI GAGTC 2 cut(s) 153, 190
SduI GDGCHC 2 cut(s) 469, 642
SfaNI GCATC 1 cut(s) 553
Sfr303I CCGCGG 1 cut(s) 47
SgrBI CCGCGG 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 3 cut(s) 284, 378, 626
SsiI CCGC 4 cut(s) 44, 46, 52, 362
SspMI CTAG 1 cut(s) 101
SstI GAGCTC 2 cut(s) 469, 642
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 1 cut(s) 316
TasI AATT 3 cut(s) 284, 378, 626
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TseFI GTSAC 3 cut(s) 259, 425, 588
Tsp45I GTSAC 3 cut(s) 259, 425, 588
TspDTI ATGAA 9 cut(s) 17, 59, 221, 290, 387, 420, 468, 510, 561
XceI RCATGY 1 cut(s) 176
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.