Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Forward (+)

10434366 .. 10436482

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGCCCAGGCTCAGATACTCGAAACCCGACTCTCTTCATTTTCCAGCTGCTCTCAACCTCTCTGTTATCTCCACGGCCATGGACGCCATGTTCCCGCCTTGGGATCGATCTGTTTCACCTCTTTTGGGTGAAACTCTAATCTACTGGCTGAAGTGTCCCTCTCAGGATGATCTTAAGCTGTCACTAGAGGACGACGACAAAATGAGCAAAGGGGTCACCTTCTCTCTATTTATGCTATTCCCTCCAAGATATGGCAATGAAAGGGTTCAATTAGGTGAAGGCAGCTCTGTTAGGAGATCAGTTGACAATGGTCAACAATTACAATTAAAAGACACTCCACATTTCTCATCCTATGAGAATCACGAAACTAGAAATGAACCTCAACAGGTGCAAGTCCACCGTGAAAACTTGCCAGCTGAAATGATGATTCTGCAGAGACCTACCGGCCCGTCAACTGCTATGTTACCTCATGTTTCCTCCAACAGGGTGCCTCGGATTCGCTGGACACCTGATCTCCACCGCTGTTTTGTGCATGCAGTTGATAGCCTTGGAGGAGAAGACAGAGCTACTCCAAAGAAGATCTTGCAGATCATGAATGTTGAAGGTGTCACCATAAATCATATAAAAAGCCATGTTCAGACGTATAGGAGCATAAAACATGAAGAACACATACAAGAAGCAGCTGCAAGAGCAAACGAGTATGTGAGAGAGCAAACCCCAGCTGAATCTGTCAATAGCTCCGCCACAGTTGTCACTTCATCCTGGTTGCATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

260

Amino Acids

29.39

Weight (kDa)

6.63

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	168 - 217	7.9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 490
AccB7I	CCANNNNNTGG	1 cut(s)	254
AciI	CCGC	3 cut(s)	98, 523, 744
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	173
AcyI	GRCGYC	2 cut(s)	5, 87
AfiI	CCNNNNNNNGG	4 cut(s)	103, 128, 254, 486
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	272, 605
AjnI	CCWGG	2 cut(s)	8, 764
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	8 cut(s)	50, 181, 288, 419, 569, 686, 725, 741
AluI	AGCT	8 cut(s)	50, 181, 288, 419, 569, 686, 725, 741
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	78, 448
ApeKI	GCWGC	4 cut(s)	50, 285, 683, 686
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	5 cut(s)	111, 143, 211, 290, 604
BanI	GGYRCC	2 cut(s)	4, 490
BarI	GAAGNNNNNNTAC	2 cut(s)	657, 689
BbsI	GAAGAC	1 cut(s)	567
BbvI	GCAGC	4 cut(s)	37, 297, 673, 695
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	2 cut(s)	10, 766
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	2 cut(s)	188, 372
BfmI	CTRYAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	176
BglII	AGATCT	1 cut(s)	582
BisI	GCNGC	4 cut(s)	51, 286, 684, 687
BlsI	GCNGC	4 cut(s)	52, 287, 685, 688
Bme1390I	CCNGG	2 cut(s)	10, 766
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	2 cut(s)	6, 492
BmrFI	CCNGG	2 cut(s)	10, 766
BoxI	GACNNNNGTC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	567
Bsa29I	ATCGAT	1 cut(s)	109
BsaHI	GRCGYC	2 cut(s)	5, 87
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	6 cut(s)	8, 75, 81, 101, 494, 550
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 128, 254, 486
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	10, 766
BseCI	ATCGAT	1 cut(s)	109
BseDI	CCNNGG	6 cut(s)	8, 75, 81, 101, 494, 550
BseGI	GGATG	3 cut(s)	175, 350, 761
BseLI	CCNNNNNNNGG	4 cut(s)	103, 128, 254, 486
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	28, 179
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	570
BseXI	GCAGC	4 cut(s)	37, 297, 673, 695
BseYI	CCCAGC	1 cut(s)	721
BshFI	GGCC	2 cut(s)	80, 450
BshNI	GGYRCC	2 cut(s)	4, 490
BshVI	ATCGAT	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	4 cut(s)	103, 128, 254, 486
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	80, 450
Bso31I	GGTCTC	1 cut(s)	433
Bsp143I	GATC	7 cut(s)	106, 110, 172, 299, 514, 582, 591
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	3 cut(s)	98, 523, 744
BspANI	GGCC	2 cut(s)	80, 450
BspCNI	CTCAG	2 cut(s)	27, 178
BspDI	ATCGAT	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	2 cut(s)	6, 492
BspMAI	CTGCAG	1 cut(s)	438
BspPI	GGATC	1 cut(s)	114
BspT107I	GGYRCC	2 cut(s)	4, 490
BspTI	CTTAAG	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	6 cut(s)	8, 75, 81, 101, 494, 550
BssMI	GATC	7 cut(s)	106, 110, 172, 299, 514, 582, 591
BssNI	GRCGYC	2 cut(s)	5, 87
BssT1I	CCWWGG	3 cut(s)	81, 101, 550
Bst2UI	CCWGG	2 cut(s)	10, 766
Bst4CI	ACNGT	2 cut(s)	404, 751
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	2 cut(s)	5, 87
BstAFI	CTTAAG	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	417, 537
BstDEI	CTNAG	2 cut(s)	14, 165
BstDSI	CCRYGG	2 cut(s)	75, 81
BstEII	GGTNACC	1 cut(s)	217
BstENI	CCTNNNNNAGG	1 cut(s)	484
BstF5I	GGATG	3 cut(s)	175, 350, 761
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	7 cut(s)	109, 113, 175, 302, 517, 585, 594
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	7 cut(s)	106, 110, 172, 299, 514, 582, 591
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 692
BstNI	CCWGG	2 cut(s)	10, 766
BstNSI	RCATGY	1 cut(s)	539
BstPAI	GACNNNNGTC	1 cut(s)	312
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	8, 764
BstSFI	CTRYAG	1 cut(s)	434
BstV1I	GCAGC	4 cut(s)	37, 297, 673, 695
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	1 cut(s)	582
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	582
Bsu15I	ATCGAT	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	80, 450
BsuTUI	ATCGAT	1 cut(s)	109
BtgI	CCRYGG	2 cut(s)	75, 81
BtsCI	GGATG	3 cut(s)	175, 350, 761
Cac8I	GCNNGC	2 cut(s)	417, 537
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	449
ClaI	ATCGAT	1 cut(s)	109
CseI	GACGC	1 cut(s)	95
CviAII	CATG	7 cut(s)	82, 91, 473, 536, 595, 635, 662
DdeI	CTNAG	2 cut(s)	14, 165
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	7 cut(s)	108, 112, 174, 301, 516, 584, 593
DpnII	GATC	7 cut(s)	106, 110, 172, 299, 514, 582, 591
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	733
Eco130I	CCWWGG	3 cut(s)	81, 101, 550
Eco31I	GGTCTC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	217
EcoNI	CCTNNNNNAGG	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	8, 764
EcoT14I	CCWWGG	3 cut(s)	81, 101, 550
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	81, 101, 550
FaeI	CATG	7 cut(s)	85, 94, 476, 539, 598, 638, 665
FalI	AAGNNNNNCTT	2 cut(s)	569, 601
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	7 cut(s)	81, 90, 472, 535, 594, 634, 661
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	51, 286, 684, 687
FokI	GGATG	3 cut(s)	182, 337, 748
Fsp4HI	GCNGC	4 cut(s)	51, 286, 684, 687
FspBI	CTAG	2 cut(s)	188, 372
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	51, 286, 684, 687
GsaI	CCCAGC	1 cut(s)	725
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	80, 450
HapII	CCGG	1 cut(s)	447
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	5, 87
Hin1II	CATG	7 cut(s)	85, 94, 476, 539, 598, 638, 665
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	3 cut(s)	307, 317, 456
HindII	GTYRAC	3 cut(s)	307, 317, 456
HinfI	GANTC	5 cut(s)	32, 361, 430, 499, 728
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	5 cut(s)	111, 143, 211, 290, 604
Hpy166II	GTNNAC	4 cut(s)	307, 317, 400, 456
Hpy188I	TCNGA	3 cut(s)	17, 498, 642
Hpy188III	TCNNGA	3 cut(s)	167, 365, 595
Hpy8I	GTNNAC	4 cut(s)	307, 317, 400, 456
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	232, 275, 599
HpyCH4III	ACNGT	2 cut(s)	404, 751
HpyCH4IV	ACGT	1 cut(s)	644
HpyCH4V	TGCA	7 cut(s)	394, 436, 535, 539, 589, 689, 772
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 692
HpyF3I	CTNAG	2 cut(s)	14, 165
HpySE526I	ACGT	1 cut(s)	644
Hsp92I	GRCGYC	2 cut(s)	5, 87
Hsp92II	CATG	7 cut(s)	85, 94, 476, 539, 598, 638, 665
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	7 cut(s)	106, 110, 172, 299, 514, 582, 591
LmnI	GCTCC	2 cut(s)	651, 746
Lsp1109I	GCAGC	4 cut(s)	37, 297, 673, 695
MaeI	CTAG	2 cut(s)	188, 372
MaeII	ACGT	1 cut(s)	644
MaeIII	GTNAC	5 cut(s)	183, 217, 465, 610, 754
MalI	GATC	7 cut(s)	108, 112, 174, 301, 516, 584, 593
MboI	GATC	7 cut(s)	106, 110, 172, 299, 514, 582, 591
MboII	GAAGA	4 cut(s)	29, 572, 592, 677
MflI	RGATCY	1 cut(s)	582
MluCI	AATT	3 cut(s)	272, 320, 326
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	2 cut(s)	177, 329
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	5 cut(s)	50, 419, 525, 686, 725
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	2 cut(s)	10, 766
MvaI	CCWGG	2 cut(s)	10, 766
MwoI	GCNNNNNNNGC	2 cut(s)	86, 692
NarI	GGCGCC	1 cut(s)	5
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	7 cut(s)	106, 110, 172, 299, 514, 582, 591
NlaIII	CATG	7 cut(s)	85, 94, 476, 539, 598, 638, 665
NlaIV	GGNNCC	2 cut(s)	6, 492
NmuCI	GTSAC	4 cut(s)	183, 217, 610, 754
NspI	RCATGY	1 cut(s)	539
PaeI	GCATGC	1 cut(s)	539
PagI	TCATGA	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	4 cut(s)	361, 430, 499, 728
PflMI	CCANNNNNTGG	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	52, 287, 685, 688
PleI	GAGTC	1 cut(s)	26
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	26
PshAI	GACNNNNGTC	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	8, 764
PspEI	GGTNACC	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	721
PspGI	CCWGG	2 cut(s)	8, 764
PspN4I	GGNNCC	2 cut(s)	6, 492
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	438
PsuI	RGATCY	1 cut(s)	582
PvuII	CAGCTG	4 cut(s)	50, 419, 686, 725
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	177, 329
SatI	GCNGC	4 cut(s)	51, 286, 684, 687
Sau3AI	GATC	7 cut(s)	106, 110, 172, 299, 514, 582, 591
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	10, 766
SfcI	CTRYAG	1 cut(s)	434
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	539
Sse9I	AATT	3 cut(s)	272, 320, 326
SsiI	CCGC	3 cut(s)	98, 523, 744
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	188, 372
StyD4I	CCNGG	2 cut(s)	8, 764
StyI	CCWWGG	3 cut(s)	81, 101, 550
TaaI	ACNGT	2 cut(s)	404, 751
TaiI	ACGT	1 cut(s)	647
TaqI	TCGA	2 cut(s)	23, 109
TasI	AATT	3 cut(s)	272, 320, 326
TfiI	GAWTC	4 cut(s)	361, 430, 499, 728
Tru1I	TTAA	2 cut(s)	177, 329
Tru9I	TTAA	2 cut(s)	177, 329
TseFI	GTSAC	4 cut(s)	183, 217, 610, 754
TseI	GCWGC	4 cut(s)	50, 285, 683, 686
Tsp45I	GTSAC	4 cut(s)	183, 217, 610, 754
TspDTI	ATGAA	6 cut(s)	29, 276, 393, 611, 678, 750
Van91I	CCANNNNNTGG	1 cut(s)	254
Vha464I	CTTAAG	1 cut(s)	176
XagI	CCTNNNNNAGG	1 cut(s)	484
XceI	RCATGY	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	2 cut(s)	188, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.