Rh5BG192300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001787
Physical Location & Seq
Forward (+)
21217847 .. 21219703
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG192300.1

Sequence Viewer

Length: 723 bp
ATGGCAACAAACAGGGTTGAATTAGGTGAAGGGAGCTCTCTTAGGGGATCAAACAGGGGTGAACAATTACAATTACAAAGCACTCCACATTTCTCATCCTATGAGAATCAAGAGAGGAAGACTGAACCTCAGCATAAGGGAGTTCGCCGTGTGAATTTGCAAGCTGAAAGGATGATCATGCCGAGACCTACTGGACAGTTAGCTGCTATGGTTAGACCTTATGTTCTCTCTAAAGTGCCTCGGATTCACTGGACACCTGATCTCCACCGCTGTTTTGTGCATGCAGTTGATATCCTTGGAGGAGCAGACAGAGCTAATCCAAAGAAGATCTTGCGAATCATGAATGTTAAAGGTCTCACCATGAATCATATAAAAAGCCATCTTCAGATGTACAGAAACATGAAAGATGATGAATTAGTACAAGAAGCAGCAGCTGCAAGAGCGGAGGCGAATGAGAAGGGGAAGCACTCCTCGCATTCAAATGACTCGTACCTAACTGAATCAATCAATAGCTCCGCTACTCCACCCTGGAAAGATGAGAAGAAAACGAAATCTTACCTCATCTTTACAGATCTATTTCAGGGATTAACCAATAATACTCGAGAAAGCAATGATGATGAAGGGACTGATGCTAATATTCGAGGAGCTATTGATGCCACAATGCCTCAGACACTAAACTCATCATCAAATGCTGGGAGTAGTTCTAATATGTGTAAATCATGA

Protein Analysis

240

Amino Acids

26.82

Weight (kDa)

9.2

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 83 - 132 1.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 443
AciI CCGC 3 cut(s) 268, 443, 516
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 3 cut(s) 392, 420, 491
AgsI TTSAA 2 cut(s) 20, 480
AjnI CCWGG 1 cut(s) 527
AluBI AGCT 7 cut(s) 36, 164, 203, 314, 434, 513, 647
AluI AGCT 7 cut(s) 36, 164, 203, 314, 434, 513, 647
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 2 cut(s) 178, 359
AlwI GGATC 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 600
ApeKI GCWGC 4 cut(s) 203, 428, 431, 434
ApoI RAATTY 1 cut(s) 154
AsuHPI GGTGA 3 cut(s) 38, 71, 349
AvaI CYCGRG 1 cut(s) 600
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 38
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 4 cut(s) 190, 421, 440, 443
BccI CCATC 1 cut(s) 387
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 529
BclI TGATCA 1 cut(s) 174
BcoDI GTCTC 2 cut(s) 178, 359
BglII AGATCT 2 cut(s) 327, 571
BisI GCNGC 4 cut(s) 204, 429, 432, 435
BlsI GCNGC 4 cut(s) 205, 430, 433, 436
Bme1390I CCNGG 1 cut(s) 529
BmeT110I CYCGRG 1 cut(s) 600
BmrFI CCNGG 1 cut(s) 529
BmsI GCATC 2 cut(s) 619, 643
BpiI GAAGAC 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 129
BsaI GGTCTC 2 cut(s) 178, 359
BsaJI CCNNGG 3 cut(s) 239, 295, 527
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse1I ACTGG 2 cut(s) 196, 254
Bse3DI GCAATG 1 cut(s) 616
BseBI CCWGG 1 cut(s) 529
BseDI CCNNGG 3 cut(s) 239, 295, 527
BseGI GGATG 2 cut(s) 95, 177
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 2 cut(s) 143, 680
BseNI ACTGG 2 cut(s) 196, 254
BseRI GAGGAG 3 cut(s) 315, 460, 657
BseXI GCAGC 4 cut(s) 190, 421, 440, 443
BseYI CCCAGC 1 cut(s) 692
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 600
BslFI GGGAC 1 cut(s) 637
BsmAI GTCTC 2 cut(s) 178, 359
BsmFI GGGAC 1 cut(s) 637
BsmI GAATGC 1 cut(s) 475
Bso31I GGTCTC 2 cut(s) 178, 359
BsoBI CYCGRG 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 38
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 5 cut(s) 47, 174, 259, 327, 571
BspACI CCGC 3 cut(s) 268, 443, 516
BspCNI CTCAG 2 cut(s) 142, 679
BspHI TCATGA 2 cut(s) 339, 719
BspPI GGATC 1 cut(s) 55
BspTNI GGTCTC 2 cut(s) 178, 359
BsrBI CCGCTC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 616
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 2 cut(s) 196, 254
BssECI CCNNGG 3 cut(s) 239, 295, 527
BssMI GATC 5 cut(s) 47, 174, 259, 327, 571
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 434
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 162, 282
BstDEI CTNAG 3 cut(s) 41, 129, 666
BstF5I GGATG 2 cut(s) 95, 177
BstKTI GATC 5 cut(s) 50, 177, 262, 330, 574
BstMAI GTCTC 2 cut(s) 178, 359
BstMBI GATC 5 cut(s) 47, 174, 259, 327, 571
BstMWI GCNNNNNNNGC 5 cut(s) 311, 434, 440, 472, 653
BstNI CCWGG 1 cut(s) 529
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 527
BstV1I GCAGC 4 cut(s) 190, 421, 440, 443
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 2 cut(s) 327, 571
BstYI RGATCY 2 cut(s) 327, 571
BtsCI GGATG 2 cut(s) 95, 177
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 162, 282
CaiI CAGNNNCTG 1 cut(s) 434
CciI TCATGA 2 cut(s) 339, 719
Csp6I GTAC 3 cut(s) 391, 419, 490
CviAII CATG 6 cut(s) 178, 281, 340, 361, 400, 720
CviJI RGCY 8 cut(s) 36, 164, 203, 314, 378, 434, 513, 647
CviKI_1 RGCY 8 cut(s) 36, 164, 203, 314, 378, 434, 513, 647
CviQI GTAC 3 cut(s) 391, 419, 490
DdeI CTNAG 3 cut(s) 41, 129, 666
DpnI GATC 5 cut(s) 49, 176, 261, 329, 573
DpnII GATC 5 cut(s) 47, 174, 259, 327, 571
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 38
Eco31I GGTCTC 2 cut(s) 178, 359
Eco32I GATATC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 600
EcoICRI GAGCTC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 527
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 6 cut(s) 181, 284, 343, 364, 403, 723
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 1 cut(s) 637
FatI CATG 6 cut(s) 177, 280, 339, 360, 399, 719
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 204, 429, 432, 435
FokI GGATG 2 cut(s) 82, 184
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 4 cut(s) 204, 429, 432, 435
GluI GCNGC 4 cut(s) 204, 429, 432, 435
GsaI CCCAGC 1 cut(s) 696
Hin1II CATG 6 cut(s) 181, 284, 343, 364, 403, 723
HinfI GANTC 6 cut(s) 106, 244, 336, 364, 485, 500
HphI GGTGA 3 cut(s) 38, 71, 349
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 3 cut(s) 243, 387, 669
Hpy188III TCNNGA 4 cut(s) 110, 340, 602, 720
Hpy8I GTNNAC 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 23, 451, 614
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 160, 280, 284, 437
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 434, 440, 472, 653
HpyF3I CTNAG 3 cut(s) 41, 129, 666
Hsp92II CATG 6 cut(s) 181, 284, 343, 364, 403, 723
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 5 cut(s) 47, 174, 259, 327, 571
LmnI GCTCC 4 cut(s) 33, 302, 518, 644
LpnPI CCDG 8 cut(s) 40, 177, 235, 270, 514, 541, 566, 678
Lsp1109I GCAGC 4 cut(s) 190, 421, 440, 443
LweI GCATC 2 cut(s) 619, 643
MalI GATC 5 cut(s) 49, 176, 261, 329, 573
MbiI CCGCTC 1 cut(s) 443
MboI GATC 5 cut(s) 47, 174, 259, 327, 571
MboII GAAGA 4 cut(s) 130, 337, 374, 553
MflI RGATCY 2 cut(s) 327, 571
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 5 cut(s) 20, 65, 71, 154, 413
MlyI GAGTC 1 cut(s) 479
MnlI CCTC 9 cut(s) 108, 138, 249, 293, 439, 481, 569, 635, 675
MseI TTAA 2 cut(s) 348, 587
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 2 cut(s) 270, 434
MspR9I CCNGG 1 cut(s) 529
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 1 cut(s) 529
MwoI GCNNNNNNNGC 5 cut(s) 311, 434, 440, 472, 653
NdeII GATC 5 cut(s) 47, 174, 259, 327, 571
NlaIII CATG 6 cut(s) 181, 284, 343, 364, 403, 723
NmeAIII GCCGAG 1 cut(s) 207
NspI RCATGY 1 cut(s) 284
PaeI GCATGC 1 cut(s) 284
PaeR7I CTCGAG 1 cut(s) 600
PagI TCATGA 2 cut(s) 339, 719
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 5 cut(s) 106, 244, 336, 364, 500
PkrI GCNGC 4 cut(s) 205, 430, 433, 436
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 527
PspFI CCCAGC 1 cut(s) 692
PspGI CCWGG 1 cut(s) 527
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 2 cut(s) 327, 571
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 3 cut(s) 392, 420, 491
RsaNI GTAC 3 cut(s) 391, 419, 490
RseI CAYNNNNRTG 1 cut(s) 480
SacI GAGCTC 1 cut(s) 38
SaqAI TTAA 2 cut(s) 348, 587
SatI GCNGC 4 cut(s) 204, 429, 432, 435
Sau3AI GATC 5 cut(s) 47, 174, 259, 327, 571
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 1 cut(s) 529
SduI GDGCHC 1 cut(s) 38
SfaNI GCATC 2 cut(s) 619, 643
Sfr274I CTCGAG 1 cut(s) 600
SlaI CTCGAG 1 cut(s) 600
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 600
SmoI CTYRAG 1 cut(s) 600
SphI GCATGC 1 cut(s) 284
Sse9I AATT 5 cut(s) 20, 65, 71, 154, 413
SsiI CCGC 3 cut(s) 268, 443, 516
SspI AATATT 1 cut(s) 637
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 601, 640
TasI AATT 5 cut(s) 20, 65, 71, 154, 413
TatI WGTACW 2 cut(s) 390, 418
TfiI GAWTC 5 cut(s) 106, 244, 336, 364, 500
Tru1I TTAA 2 cut(s) 348, 587
Tru9I TTAA 2 cut(s) 348, 587
TscAI CASTG 1 cut(s) 254
TseI GCWGC 4 cut(s) 203, 428, 431, 434
TspDTI ATGAA 5 cut(s) 356, 377, 416, 426, 633
TspRI CASTG 1 cut(s) 254
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.