Rw5G002010
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001787
Physical Location & Seq
Reverse (-)
1736698 .. 1739558
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G002010.1

Sequence Viewer

Length: 936 bp
ATGGAGAGAGTTGAGATAGTTGATCGTTTGAGTTCTCTTGTGAGCTCTTCGTCCTCTTCACTTGACAATGGAGAAGTATATTCTCCGAACTGCTCGTCATTTGGTGATCATGCTATGAGAATTGCAGCTCAAAGAATGAGAGTTCACTATACTAATTTGCCAGCCCATCAGATAAGCCTGCTGAAATCATCAACTACAGTTAGACCTTATGTTCGTTCGAAAGTGCCTCGGCTTCGTTGGTCACCTGATCTTCACCGCTGTTTTGTGCATGCAGTTGAAAGGCTTGGAGGAGAAGACAGAGCTACTCCAAAGTTGATTTTGGAGATCATGAATGTGAAGGGCCTTACCATATCTCATATAAAAAGCCATCTTCAGATGTACAGGAGCATGAAGCATGAAAAACGCATACAAGAAGCGGCTATAGCAGCAAAGAGGAACGATAAGGCAAATCCCTCGGACTCAAACAATTCATACTGGCTAAATTCAAATAAGAGTACTGCTACTCCCCCTACTTATTGCCAAAGGAGCAATTGGATGATGAGAAACATGTACAATAGTGCACCCTACCAAAGCAATAGAAGCTACATTGAAGGAATTGATCACAAGAATACGAGCACCCTGGGAAAATGGAACAATGAGAATTGCAGACAGAATTCTTACTTCATATTCACTGATCTAGTCAAAAGAGGCAGTGATGATGCTCAAGAGAGCAATAATCAAGTGAAAGTACTGTCATTAGTCAATGCTGGCTGCCAAAGCAATCATAGTAAACCGGAAGATTTACGTGGTGAAACTGAAACTGGAGCAGAGATTGATGCTGCAATGTCTCCATCACTCAAATCGTCATCAAAGGCTTATTATTCGCAGCAGTTCAGGCCAAGCGACTCTGAGAATTCAGTTGTGAATGATGTCTCTCTAGAACTTAGTCTTACTTAA

Protein Analysis

311

Amino Acids

35.1

Weight (kDa)

9.1

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 77 - 128 1.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 256, 416
AcsI RAATTY 3 cut(s) 481, 652, 892
AcuI CTGAAG 1 cut(s) 356
AfaI GTAC 4 cut(s) 380, 496, 551, 729
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 3 cut(s) 278, 486, 590
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 4 cut(s) 45, 128, 302, 582
AluI AGCT 4 cut(s) 45, 128, 302, 582
Alw21I GWGCWC 3 cut(s) 47, 562, 617
Alw26I GTCTC 2 cut(s) 831, 916
Alw44I GTGCAC 1 cut(s) 558
AoxI GGCC 2 cut(s) 340, 875
ApaLI GTGCAC 1 cut(s) 558
ApeKI GCWGC 5 cut(s) 125, 425, 750, 818, 865
ApoI RAATTY 3 cut(s) 481, 652, 892
ArsI GACNNNNNNTTYG 4 cut(s) 80, 112, 195, 227
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 4 cut(s) 116, 234, 245, 800
AsuII TTCGAA 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 3 cut(s) 47, 562, 617
BbvI GCAGC 5 cut(s) 137, 437, 737, 805, 877
BccI CCATC 3 cut(s) 174, 375, 838
BcgI CGANNNNNNTGC 2 cut(s) 435, 469
BciT130I CCWGG 1 cut(s) 620
BclI TGATCA 2 cut(s) 106, 598
BcoDI GTCTC 2 cut(s) 831, 916
BfaI CTAG 2 cut(s) 677, 917
BfmI CTRYAG 2 cut(s) 195, 420
BisI GCNGC 6 cut(s) 126, 417, 426, 751, 819, 866
BlsI GCNGC 6 cut(s) 127, 418, 427, 752, 820, 867
BmcAI AGTACT 2 cut(s) 496, 729
Bme1390I CCNGG 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 620
BmsI GCATC 2 cut(s) 688, 805
BpiI GAAGAC 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 822
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 687
BsaAI YACGTR 1 cut(s) 785
BsaJI CCNNGG 4 cut(s) 227, 453, 618, 619
BsaWI WCCGGW 1 cut(s) 772
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bse1I ACTGG 2 cut(s) 479, 805
Bse3DI GCAATG 1 cut(s) 828
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 4 cut(s) 227, 453, 618, 619
BseGI GGATG 1 cut(s) 540
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 1 cut(s) 879
BseNI ACTGG 2 cut(s) 479, 805
BseRI GAGGAG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 5 cut(s) 137, 437, 737, 805, 877
BshFI GGCC 2 cut(s) 342, 877
BsiHKAI GWGCWC 3 cut(s) 47, 562, 617
BsiSI CCGG 1 cut(s) 773
BsmAI GTCTC 2 cut(s) 831, 916
BsnI GGCC 2 cut(s) 342, 877
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 3 cut(s) 47, 562, 617
Bsp1407I TGTACA 2 cut(s) 378, 549
Bsp143I GATC 6 cut(s) 22, 106, 247, 324, 598, 673
BspACI CCGC 2 cut(s) 256, 416
BspANI GGCC 2 cut(s) 342, 877
BspCNI CTCAG 1 cut(s) 880
BspHI TCATGA 1 cut(s) 327
BspQI GCTCTTC 1 cut(s) 52
BspT104I TTCGAA 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 828
BsrGI TGTACA 2 cut(s) 378, 549
BsrI ACTGG 2 cut(s) 479, 805
BssECI CCNNGG 4 cut(s) 227, 453, 618, 619
BssMI GATC 6 cut(s) 22, 106, 247, 324, 598, 673
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 2 cut(s) 199, 732
Bst6I CTCTTC 2 cut(s) 52, 61
BstAUI TGTACA 2 cut(s) 378, 549
BstBAI YACGTR 1 cut(s) 785
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 4 cut(s) 162, 179, 270, 748
BstDEI CTNAG 2 cut(s) 888, 923
BstEII GGTNACC 1 cut(s) 240
BstF5I GGATG 1 cut(s) 540
BstKTI GATC 6 cut(s) 25, 109, 250, 327, 601, 676
BstMAI GTCTC 2 cut(s) 831, 916
BstMBI GATC 6 cut(s) 22, 106, 247, 324, 598, 673
BstMWI GCNNNNNNNGC 6 cut(s) 422, 425, 525, 579, 756, 874
BstNI CCWGG 1 cut(s) 620
BstNSI RCATGY 2 cut(s) 272, 550
BstPI GGTNACC 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 618
BstSFI CTRYAG 2 cut(s) 195, 420
BstSLI GKGCMC 1 cut(s) 562
BstV1I GCAGC 5 cut(s) 137, 437, 737, 805, 877
BstV2I GAAGAC 1 cut(s) 300
BsuRI GGCC 2 cut(s) 342, 877
BtsCI GGATG 1 cut(s) 540
BtsI GCAGTG 1 cut(s) 697
BtsIMutI CAGTG 2 cut(s) 669, 697
Cac8I GCNNGC 4 cut(s) 162, 179, 270, 748
CciI TCATGA 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 4 cut(s) 379, 495, 550, 728
CviAII CATG 6 cut(s) 110, 269, 328, 388, 395, 547
CviQI GTAC 4 cut(s) 379, 495, 550, 728
DdeI CTNAG 2 cut(s) 888, 923
DpnI GATC 6 cut(s) 24, 108, 249, 326, 600, 675
DpnII GATC 6 cut(s) 22, 106, 247, 324, 598, 673
Eam1104I CTCTTC 2 cut(s) 52, 61
EarI CTCTTC 2 cut(s) 52, 61
Ecl136II GAGCTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 356
Eco91I GGTNACC 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 240
EcoRI GAATTC 2 cut(s) 652, 892
EcoRII CCWGG 1 cut(s) 618
EcoT38I GRGCYC 1 cut(s) 47
FaeI CATG 6 cut(s) 113, 272, 331, 391, 398, 550
FatI CATG 6 cut(s) 109, 268, 327, 387, 394, 546
FbaI TGATCA 2 cut(s) 106, 598
Fnu4HI GCNGC 6 cut(s) 126, 417, 426, 751, 819, 866
FokI GGATG 1 cut(s) 547
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 6 cut(s) 126, 417, 426, 751, 819, 866
FspBI CTAG 2 cut(s) 677, 917
GluI GCNGC 6 cut(s) 126, 417, 426, 751, 819, 866
GsuI CTGGAG 1 cut(s) 822
HaeIII GGCC 2 cut(s) 342, 877
HapII CCGG 1 cut(s) 773
Hin1II CATG 6 cut(s) 113, 272, 331, 391, 398, 550
HinfI GANTC 2 cut(s) 458, 884
HpaII CCGG 1 cut(s) 773
HphI GGTGA 4 cut(s) 116, 234, 245, 800
Hpy166II GTNNAC 3 cut(s) 145, 560, 770
Hpy188I TCNGA 5 cut(s) 87, 171, 375, 457, 889
Hpy188III TCNNGA 3 cut(s) 328, 704, 917
Hpy8I GTNNAC 3 cut(s) 145, 560, 770
HpyAV CCTTC 2 cut(s) 331, 584
HpyCH4III ACNGT 2 cut(s) 199, 732
HpyCH4IV ACGT 1 cut(s) 784
HpyCH4V TGCA 6 cut(s) 125, 268, 272, 560, 645, 821
HpyF10VI GCNNNNNNNGC 6 cut(s) 422, 425, 525, 579, 756, 874
HpyF3I CTNAG 2 cut(s) 888, 923
HpySE526I ACGT 1 cut(s) 784
Hsp92II CATG 6 cut(s) 113, 272, 331, 391, 398, 550
Ksp22I TGATCA 2 cut(s) 106, 598
Kzo9I GATC 6 cut(s) 22, 106, 247, 324, 598, 673
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 3 cut(s) 384, 525, 803
Lsp1109I GCAGC 5 cut(s) 137, 437, 737, 805, 877
LweI GCATC 2 cut(s) 688, 805
MaeI CTAG 2 cut(s) 677, 917
MaeII ACGT 1 cut(s) 784
MaeIII GTNAC 1 cut(s) 240
MalI GATC 6 cut(s) 24, 108, 249, 326, 600, 675
MboI GATC 6 cut(s) 22, 106, 247, 324, 598, 673
MboII GAAGA 6 cut(s) 39, 48, 242, 305, 362, 788
MfeI CAATTG 1 cut(s) 529
MhlI GDGCHC 3 cut(s) 47, 562, 617
MluCI AATT 9 cut(s) 120, 154, 466, 481, 529, 594, 640, 652, 892
MlyI GAGTC 2 cut(s) 452, 878
MnlI CCTC 6 cut(s) 64, 237, 281, 426, 463, 680
MseI TTAA 1 cut(s) 934
MslI CAYNNNNRTG 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 773
MspR9I CCNGG 1 cut(s) 620
MunI CAATTG 1 cut(s) 529
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 6 cut(s) 422, 425, 525, 579, 756, 874
NdeII GATC 6 cut(s) 22, 106, 247, 324, 598, 673
NlaIII CATG 6 cut(s) 113, 272, 331, 391, 398, 550
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 240
NspI RCATGY 2 cut(s) 272, 550
NspV TTCGAA 1 cut(s) 218
PaeI GCATGC 1 cut(s) 272
PagI TCATGA 1 cut(s) 327
PasI CCCWGGG 1 cut(s) 619
PciI ACATGT 1 cut(s) 546
PciSI GCTCTTC 1 cut(s) 52
PkrI GCNGC 6 cut(s) 127, 418, 427, 752, 820, 867
PleI GAGTC 2 cut(s) 452, 878
PpsI GAGTC 2 cut(s) 452, 878
Ppu21I YACGTR 1 cut(s) 785
PscI ACATGT 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 618
PspEI GGTNACC 1 cut(s) 240
PspGI CCWGG 1 cut(s) 618
PspPI GGNCC 1 cut(s) 340
RsaI GTAC 4 cut(s) 380, 496, 551, 729
RsaNI GTAC 4 cut(s) 379, 495, 550, 728
RseI CAYNNNNRTG 1 cut(s) 332
SacI GAGCTC 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 934
SatI GCNGC 6 cut(s) 126, 417, 426, 751, 819, 866
Sau3AI GATC 6 cut(s) 22, 106, 247, 324, 598, 673
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 2 cut(s) 496, 729
SchI GAGTC 2 cut(s) 452, 878
ScrFI CCNGG 1 cut(s) 620
SduI GDGCHC 3 cut(s) 47, 562, 617
SetI ASST 7 cut(s) 47, 130, 208, 247, 304, 584, 787
SfaNI GCATC 2 cut(s) 688, 805
SfcI CTRYAG 2 cut(s) 195, 420
SfuI TTCGAA 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 702
SmoI CTYRAG 1 cut(s) 702
SphI GCATGC 1 cut(s) 272
Sse9I AATT 9 cut(s) 120, 154, 466, 481, 529, 594, 640, 652, 892
SsiI CCGC 2 cut(s) 256, 416
SspMI CTAG 2 cut(s) 677, 917
SstI GAGCTC 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 618
TaaI ACNGT 2 cut(s) 199, 732
TaiI ACGT 1 cut(s) 787
TaqI TCGA 1 cut(s) 218
TasI AATT 9 cut(s) 120, 154, 466, 481, 529, 594, 640, 652, 892
TatI WGTACW 4 cut(s) 378, 494, 549, 727
TauI GCSGC 1 cut(s) 419
Tru1I TTAA 1 cut(s) 934
Tru9I TTAA 1 cut(s) 934
TscAI CASTG 2 cut(s) 676, 697
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 5 cut(s) 125, 425, 750, 818, 865
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 5 cut(s) 344, 404, 411, 459, 652
TspRI CASTG 2 cut(s) 676, 697
VneI GTGCAC 1 cut(s) 558
XapI RAATTY 3 cut(s) 481, 652, 892
XbaI TCTAGA 1 cut(s) 916
XceI RCATGY 2 cut(s) 272, 550
XspI CTAG 2 cut(s) 677, 917
ZrmI AGTACT 2 cut(s) 496, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.