Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Reverse (-)

1503003 .. 1506196

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG021600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAGAGAGTTGAGATAGTTGATCGTTTGAGTTCTCTTGTGAGCTCTTCGTCCTCTTCACTTGACAATGGAGAAGTATATTCTCCGAACTGCTCGTCATTTGGTGATCATGCTATGAGAATTGCAGCTCAAAGAATGAGAGTTCACTATACTAATTTGCCAGCCCATCAGATAAGCCTGCTGAAATCATCAACTACAGTTAGACCTTATGTTCGTTCGAAAGTGCCTCGGCTTCGTTGGTCACCTGATCTTCACCGCTGTTTTGTGCATGCAGTTGAAAGGCTTGGAGGAGAAGACAGAGCTACTCCAAAGTTGATTTTGGAGATCATGAATGTGAAGGGCCTTACCATATCTCATATAAAAAGCCATCTTCAGATGTACAGGAGCATGAAGCATGAAAAACGCATACAAGAAGCGGCTATAGCAGCAAAGAGGAACGATAAGGCAAATCCCTCGGACTCAAACAATTCATACTGGCTAAATTCAAATAAGAGTACTGCTACTCCCCCTACTTATTGCCAAAGGAGCAATTGGATGATGAGAAACATGTACAATAGTGCACCCTACCAAAGCAATAGAAGCTACATTGAAGGAATTGATCACAAGAATACGAGCACCCTGGGAAAATGGAACAATGAGAATTACAGACAGAATTCTTACTTCATATTCACTGATCTAGTCAAAAGAGGCAGTGATGATGCTCAAGTACTACGACTATCTCTCTTGTCTATATCTATTACTTGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

249

Amino Acids

28.6

Weight (kDa)

9.8

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	77 - 128	9.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	256, 416
AcsI	RAATTY	2 cut(s)	481, 652
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	4 cut(s)	380, 496, 551, 708
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	3 cut(s)	278, 486, 590
AjnI	CCWGG	1 cut(s)	618
AluBI	AGCT	4 cut(s)	45, 128, 302, 582
AluI	AGCT	4 cut(s)	45, 128, 302, 582
Alw21I	GWGCWC	3 cut(s)	47, 562, 617
Alw44I	GTGCAC	1 cut(s)	558
AoxI	GGCC	1 cut(s)	340
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	2 cut(s)	125, 425
ApoI	RAATTY	2 cut(s)	481, 652
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 195, 227
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	3 cut(s)	116, 234, 245
AsuII	TTCGAA	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	3 cut(s)	47, 562, 617
BbvI	GCAGC	2 cut(s)	137, 437
BccI	CCATC	2 cut(s)	174, 375
BcgI	CGANNNNNNTGC	2 cut(s)	435, 469
BciT130I	CCWGG	1 cut(s)	620
BclI	TGATCA	2 cut(s)	106, 598
BfaI	CTAG	1 cut(s)	677
BfmI	CTRYAG	2 cut(s)	195, 420
BisI	GCNGC	3 cut(s)	126, 417, 426
BlsI	GCNGC	3 cut(s)	127, 418, 427
BmcAI	AGTACT	2 cut(s)	496, 708
Bme1390I	CCNGG	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	620
BmsI	GCATC	1 cut(s)	688
BpiI	GAAGAC	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	687
BsaJI	CCNNGG	4 cut(s)	227, 453, 618, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bse1I	ACTGG	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	620
BseDI	CCNNGG	4 cut(s)	227, 453, 618, 619
BseGI	GGATG	1 cut(s)	540
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	2 cut(s)	137, 437
BshFI	GGCC	1 cut(s)	342
BsiHKAI	GWGCWC	3 cut(s)	47, 562, 617
BsnI	GGCC	1 cut(s)	342
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	3 cut(s)	47, 562, 617
Bsp1407I	TGTACA	2 cut(s)	378, 549
Bsp143I	GATC	6 cut(s)	22, 106, 247, 324, 598, 673
BspACI	CCGC	2 cut(s)	256, 416
BspANI	GGCC	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	218
BsrGI	TGTACA	2 cut(s)	378, 549
BsrI	ACTGG	1 cut(s)	479
BssECI	CCNNGG	4 cut(s)	227, 453, 618, 619
BssMI	GATC	6 cut(s)	22, 106, 247, 324, 598, 673
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	52, 61
BstAUI	TGTACA	2 cut(s)	378, 549
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	162, 179, 270
BstEII	GGTNACC	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	540
BstKTI	GATC	6 cut(s)	25, 109, 250, 327, 601, 676
BstMBI	GATC	6 cut(s)	22, 106, 247, 324, 598, 673
BstMWI	GCNNNNNNNGC	4 cut(s)	422, 425, 525, 579
BstNI	CCWGG	1 cut(s)	620
BstNSI	RCATGY	2 cut(s)	272, 550
BstPI	GGTNACC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	618
BstSFI	CTRYAG	2 cut(s)	195, 420
BstSLI	GKGCMC	1 cut(s)	562
BstV1I	GCAGC	2 cut(s)	137, 437
BstV2I	GAAGAC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	540
BtsI	GCAGTG	1 cut(s)	697
BtsIMutI	CAGTG	2 cut(s)	669, 697
Cac8I	GCNNGC	3 cut(s)	162, 179, 270
CciI	TCATGA	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	340
Csp6I	GTAC	4 cut(s)	379, 495, 550, 707
CviAII	CATG	6 cut(s)	110, 269, 328, 388, 395, 547
CviQI	GTAC	4 cut(s)	379, 495, 550, 707
DpnI	GATC	6 cut(s)	24, 108, 249, 326, 600, 675
DpnII	GATC	6 cut(s)	22, 106, 247, 324, 598, 673
Eam1104I	CTCTTC	2 cut(s)	52, 61
EarI	CTCTTC	2 cut(s)	52, 61
Ecl136II	GAGCTC	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	356
Eco91I	GGTNACC	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	47
FaeI	CATG	6 cut(s)	113, 272, 331, 391, 398, 550
FatI	CATG	6 cut(s)	109, 268, 327, 387, 394, 546
FbaI	TGATCA	2 cut(s)	106, 598
Fnu4HI	GCNGC	3 cut(s)	126, 417, 426
FokI	GGATG	1 cut(s)	547
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	3 cut(s)	126, 417, 426
FspBI	CTAG	1 cut(s)	677
GluI	GCNGC	3 cut(s)	126, 417, 426
HaeIII	GGCC	1 cut(s)	342
Hin1II	CATG	6 cut(s)	113, 272, 331, 391, 398, 550
HinfI	GANTC	1 cut(s)	458
HphI	GGTGA	3 cut(s)	116, 234, 245
Hpy166II	GTNNAC	2 cut(s)	145, 560
Hpy188I	TCNGA	5 cut(s)	87, 171, 375, 457, 749
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	2 cut(s)	145, 560
HpyAV	CCTTC	2 cut(s)	331, 584
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	125, 268, 272, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	422, 425, 525, 579
Hsp92II	CATG	6 cut(s)	113, 272, 331, 391, 398, 550
Ksp22I	TGATCA	2 cut(s)	106, 598
Kzo9I	GATC	6 cut(s)	22, 106, 247, 324, 598, 673
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	384, 525
LpnPI	CCDG	7 cut(s)	174, 191, 258, 367, 460, 605, 632
Lsp1109I	GCAGC	2 cut(s)	137, 437
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	1 cut(s)	677
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	6 cut(s)	24, 108, 249, 326, 600, 675
MboI	GATC	6 cut(s)	22, 106, 247, 324, 598, 673
MboII	GAAGA	5 cut(s)	39, 48, 242, 305, 362
MfeI	CAATTG	1 cut(s)	529
MhlI	GDGCHC	3 cut(s)	47, 562, 617
MluCI	AATT	8 cut(s)	120, 154, 466, 481, 529, 594, 640, 652
MlyI	GAGTC	1 cut(s)	452
MnlI	CCTC	6 cut(s)	64, 237, 281, 426, 463, 680
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	620
MunI	CAATTG	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	620
MwoI	GCNNNNNNNGC	4 cut(s)	422, 425, 525, 579
NdeII	GATC	6 cut(s)	22, 106, 247, 324, 598, 673
NlaIII	CATG	6 cut(s)	113, 272, 331, 391, 398, 550
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	240
NspI	RCATGY	2 cut(s)	272, 550
NspV	TTCGAA	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	272
PagI	TCATGA	1 cut(s)	327
PasI	CCCWGGG	1 cut(s)	619
PciI	ACATGT	1 cut(s)	546
PciSI	GCTCTTC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	127, 418, 427
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PscI	ACATGT	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	618
PspEI	GGTNACC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	618
PspPI	GGNCC	1 cut(s)	340
RsaI	GTAC	4 cut(s)	380, 496, 551, 708
RsaNI	GTAC	4 cut(s)	379, 495, 550, 707
RseI	CAYNNNNRTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	52
SatI	GCNGC	3 cut(s)	126, 417, 426
Sau3AI	GATC	6 cut(s)	22, 106, 247, 324, 598, 673
Sau96I	GGNCC	1 cut(s)	340
ScaI	AGTACT	2 cut(s)	496, 708
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	620
SduI	GDGCHC	3 cut(s)	47, 562, 617
SetI	ASST	6 cut(s)	47, 130, 208, 247, 304, 584
SfaNI	GCATC	1 cut(s)	688
SfcI	CTRYAG	2 cut(s)	195, 420
SfuI	TTCGAA	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	8 cut(s)	120, 154, 466, 481, 529, 594, 640, 652
SsiI	CCGC	2 cut(s)	256, 416
SspMI	CTAG	1 cut(s)	677
SstI	GAGCTC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	218
TasI	AATT	8 cut(s)	120, 154, 466, 481, 529, 594, 640, 652
TatI	WGTACW	4 cut(s)	378, 494, 549, 706
TauI	GCSGC	1 cut(s)	419
TscAI	CASTG	2 cut(s)	676, 697
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	2 cut(s)	125, 425
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	5 cut(s)	344, 404, 411, 459, 652
TspRI	CASTG	2 cut(s)	676, 697
VneI	GTGCAC	1 cut(s)	558
XapI	RAATTY	2 cut(s)	481, 652
XceI	RCATGY	2 cut(s)	272, 550
XspI	CTAG	1 cut(s)	677
ZrmI	AGTACT	2 cut(s)	496, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.