Rw5G017700
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001787
Physical Location & Seq
Forward (+)
22599627 .. 22601322
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017700.1

Sequence Viewer

Length: 741 bp
ATGGCAACAAACAGGGTTGAATTAGGTGAAGGGAGCTCTCTTAGGGGATCAAACAGGGGTGAGCAATTACAATTACAAAGCACTCCACATTTCTCATCCTATGAGAATCAAGAAAGGAAGAATGAACCTCAGCATAAGGGAGTTCGCCGTGTGAATTTGCAAGCTGAAAGGATGATCATGCCGAGACCTACTGGACAGTTAACTGCTATGGTTAGACCTTATGTTCTCTCTAAAGTGCCTCGGATTCTCTGGACACCTGATCTCCACCGCTGTTTTGTGCATGCAGTTGATATCCTTGGAGGAGCAGACAGAGCTAATCCAAAGAAGATCTTACGAATCATGAATGTTAAAGGTCTCACCATGAATCATATAAAAAGCCATCTTCAGATGTACAGAAACATGAAAGATGAAGAATTAGTACAAGCAGCAGCTGCAAGAGCGGAGGCGAATGAGAAGGGGAAGCACTCCTCGCATTCAAATGACTCGTACCTAACTGAATCAATCAATAGCTCCGCTACTCCACCCTGGAAAGATGAGAAGAAAACGAAATCTTACCTCATCTTTACAGATCTATTTCAGGGATTAACCAATAATACTCGAGAAAGCAATGATGATGAAGGGACTGATGCTAATATTCGAGGAGCTATTGATGCCACAATGCCTCAGACACTAAACTCATCATCAAATGCTGGGAGTAATTCTAATGTAAATGATGTCTCCCTTGAACTCACTCTTGGTTAA

Protein Analysis

246

Amino Acids

27.44

Weight (kDa)

8.94

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 84 - 132 2.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 440
AciI CCGC 3 cut(s) 268, 440, 513
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 3 cut(s) 392, 420, 488
AgsI TTSAA 3 cut(s) 20, 477, 725
AjnI CCWGG 1 cut(s) 524
AjuI GAANNNNNNNTTGG 1 cut(s) 717
AluBI AGCT 6 cut(s) 36, 164, 314, 431, 510, 644
AluI AGCT 6 cut(s) 36, 164, 314, 431, 510, 644
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 3 cut(s) 178, 359, 721
AlwI GGATC 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 431
Ama87I CYCGRG 1 cut(s) 597
ApeKI GCWGC 3 cut(s) 425, 428, 431
ApoI RAATTY 1 cut(s) 154
AsuHPI GGTGA 3 cut(s) 38, 71, 349
AvaI CYCGRG 1 cut(s) 597
BanII GRGCYC 1 cut(s) 38
BarI GAAGNNNNNNTAC 2 cut(s) 402, 434
Bbv12I GWGCWC 1 cut(s) 38
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 3 cut(s) 418, 437, 440
BccI CCATC 1 cut(s) 387
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 526
BclI TGATCA 1 cut(s) 174
BcoDI GTCTC 3 cut(s) 178, 359, 721
BglII AGATCT 2 cut(s) 327, 568
BisI GCNGC 3 cut(s) 426, 429, 432
BlsI GCNGC 3 cut(s) 427, 430, 433
Bme1390I CCNGG 1 cut(s) 526
BmeT110I CYCGRG 1 cut(s) 597
BmrFI CCNGG 1 cut(s) 526
BmsI GCATC 2 cut(s) 616, 640
Bpu10I CCTNAGC 1 cut(s) 129
BsaI GGTCTC 2 cut(s) 178, 359
BsaJI CCNNGG 3 cut(s) 239, 295, 524
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 613
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 3 cut(s) 239, 295, 524
BseGI GGATG 2 cut(s) 95, 177
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 2 cut(s) 143, 677
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 3 cut(s) 315, 457, 654
BseXI GCAGC 3 cut(s) 418, 437, 440
BseYI CCCAGC 1 cut(s) 689
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 597
BslFI GGGAC 1 cut(s) 634
BsmAI GTCTC 3 cut(s) 178, 359, 721
BsmFI GGGAC 1 cut(s) 634
BsmI GAATGC 1 cut(s) 472
Bso31I GGTCTC 2 cut(s) 178, 359
BsoBI CYCGRG 1 cut(s) 597
Bsp1286I GDGCHC 1 cut(s) 38
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 5 cut(s) 47, 174, 259, 327, 568
BspACI CCGC 3 cut(s) 268, 440, 513
BspCNI CTCAG 2 cut(s) 142, 676
BspHI TCATGA 1 cut(s) 339
BspPI GGATC 1 cut(s) 55
BspTNI GGTCTC 2 cut(s) 178, 359
BsrBI CCGCTC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 613
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 3 cut(s) 239, 295, 524
BssMI GATC 5 cut(s) 47, 174, 259, 327, 568
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 162, 282
BstDEI CTNAG 3 cut(s) 41, 129, 663
BstF5I GGATG 2 cut(s) 95, 177
BstKTI GATC 5 cut(s) 50, 177, 262, 330, 571
BstMAI GTCTC 3 cut(s) 178, 359, 721
BstMBI GATC 5 cut(s) 47, 174, 259, 327, 568
BstMWI GCNNNNNNNGC 5 cut(s) 311, 431, 437, 469, 650
BstNI CCWGG 1 cut(s) 526
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 524
BstV1I GCAGC 3 cut(s) 418, 437, 440
BstX2I RGATCY 2 cut(s) 327, 568
BstYI RGATCY 2 cut(s) 327, 568
BtsCI GGATG 2 cut(s) 95, 177
Cac8I GCNNGC 2 cut(s) 162, 282
CaiI CAGNNNCTG 1 cut(s) 431
CciI TCATGA 1 cut(s) 339
Csp6I GTAC 3 cut(s) 391, 419, 487
CviAII CATG 5 cut(s) 178, 281, 340, 361, 400
CviJI RGCY 7 cut(s) 36, 164, 314, 378, 431, 510, 644
CviKI_1 RGCY 7 cut(s) 36, 164, 314, 378, 431, 510, 644
CviQI GTAC 3 cut(s) 391, 419, 487
DdeI CTNAG 3 cut(s) 41, 129, 663
DpnI GATC 5 cut(s) 49, 176, 261, 329, 570
DpnII GATC 5 cut(s) 47, 174, 259, 327, 568
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 38
Eco31I GGTCTC 2 cut(s) 178, 359
Eco32I GATATC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 597
EcoICRI GAGCTC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 524
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 5 cut(s) 181, 284, 343, 364, 403
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 1 cut(s) 634
FatI CATG 5 cut(s) 177, 280, 339, 360, 399
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 426, 429, 432
FokI GGATG 2 cut(s) 82, 184
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 426, 429, 432
GluI GCNGC 3 cut(s) 426, 429, 432
GsaI CCCAGC 1 cut(s) 693
Hin1II CATG 5 cut(s) 181, 284, 343, 364, 403
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HinfI GANTC 6 cut(s) 106, 244, 336, 364, 482, 497
HpaI GTTAAC 1 cut(s) 201
HphI GGTGA 3 cut(s) 38, 71, 349
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 3 cut(s) 243, 387, 666
Hpy188III TCNNGA 4 cut(s) 110, 250, 340, 599
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 3 cut(s) 23, 448, 611
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 160, 280, 284, 434
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 431, 437, 469, 650
HpyF3I CTNAG 3 cut(s) 41, 129, 663
Hsp92II CATG 5 cut(s) 181, 284, 343, 364, 403
Ksp22I TGATCA 1 cut(s) 174
KspAI GTTAAC 1 cut(s) 201
Kzo9I GATC 5 cut(s) 47, 174, 259, 327, 568
LmnI GCTCC 4 cut(s) 33, 302, 515, 641
LpnPI CCDG 8 cut(s) 40, 177, 235, 270, 511, 538, 563, 675
Lsp1109I GCAGC 3 cut(s) 418, 437, 440
LweI GCATC 2 cut(s) 616, 640
MalI GATC 5 cut(s) 49, 176, 261, 329, 570
MbiI CCGCTC 1 cut(s) 440
MboI GATC 5 cut(s) 47, 174, 259, 327, 568
MboII GAAGA 5 cut(s) 130, 337, 374, 422, 550
MflI RGATCY 2 cut(s) 327, 568
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 6 cut(s) 20, 65, 71, 154, 413, 697
MlyI GAGTC 1 cut(s) 476
MnlI CCTC 8 cut(s) 138, 249, 293, 436, 478, 566, 632, 672
MseI TTAA 4 cut(s) 200, 348, 584, 739
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 2 cut(s) 270, 431
MspR9I CCNGG 1 cut(s) 526
Mva1269I GAATGC 1 cut(s) 472
MvaI CCWGG 1 cut(s) 526
MwoI GCNNNNNNNGC 5 cut(s) 311, 431, 437, 469, 650
NdeII GATC 5 cut(s) 47, 174, 259, 327, 568
NlaIII CATG 5 cut(s) 181, 284, 343, 364, 403
NmeAIII GCCGAG 1 cut(s) 207
NspI RCATGY 1 cut(s) 284
PaeI GCATGC 1 cut(s) 284
PaeR7I CTCGAG 1 cut(s) 597
PagI TCATGA 1 cut(s) 339
PctI GAATGC 1 cut(s) 472
PfeI GAWTC 5 cut(s) 106, 244, 336, 364, 497
PkrI GCNGC 3 cut(s) 427, 430, 433
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 524
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 2 cut(s) 327, 568
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 3 cut(s) 392, 420, 488
RsaNI GTAC 3 cut(s) 391, 419, 487
RseI CAYNNNNRTG 1 cut(s) 477
SacI GAGCTC 1 cut(s) 38
SaqAI TTAA 4 cut(s) 200, 348, 584, 739
SatI GCNGC 3 cut(s) 426, 429, 432
Sau3AI GATC 5 cut(s) 47, 174, 259, 327, 568
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 1 cut(s) 526
SduI GDGCHC 1 cut(s) 38
SfaNI GCATC 2 cut(s) 616, 640
Sfr274I CTCGAG 1 cut(s) 597
SlaI CTCGAG 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
SphI GCATGC 1 cut(s) 284
Sse9I AATT 6 cut(s) 20, 65, 71, 154, 413, 697
SsiI CCGC 3 cut(s) 268, 440, 513
SspI AATATT 1 cut(s) 634
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 524
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 598, 637
TasI AATT 6 cut(s) 20, 65, 71, 154, 413, 697
TatI WGTACW 2 cut(s) 390, 418
TfiI GAWTC 5 cut(s) 106, 244, 336, 364, 497
Tru1I TTAA 4 cut(s) 200, 348, 584, 739
Tru9I TTAA 4 cut(s) 200, 348, 584, 739
TseI GCWGC 3 cut(s) 425, 428, 431
TspDTI ATGAA 6 cut(s) 138, 356, 377, 416, 423, 630
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.