transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605 |
| fragaria_vesca | FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530 |
| malus_domestica | MD10G1323600.v1.1 |
| prunus_persica | Prupe.4G018700_v2.0.a1 |
| pyrus_communis | pycom10g27390 |
| rosa_chinensis | RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581 |
| rosa_laevigata | RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030 |
| rosa_multiflora | Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280 |
| rosa_rugosa | Rorug04G0398200 Rorug04G0398300 |
| rosa_samantha | Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000 |
| rosa_wichuraiana | Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 153, 366 |
| AclWI | GGATC | 1 cut(s) | 209 |
| AcoI | YGGCCR | 1 cut(s) | 79 |
| AcuI | CTGAAG | 1 cut(s) | 233 |
| AfaI | GTAC | 2 cut(s) | 257, 335 |
| AgsI | TTSAA | 2 cut(s) | 20, 215 |
| AjnI | CCWGG | 1 cut(s) | 377 |
| AluBI | AGCT | 4 cut(s) | 36, 59, 302, 363 |
| AluI | AGCT | 4 cut(s) | 36, 59, 302, 363 |
| Alw26I | GTCTC | 2 cut(s) | 64, 224 |
| AlwI | GGATC | 1 cut(s) | 209 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 302 |
| AoxI | GGCC | 2 cut(s) | 65, 79 |
| ApeKI | GCWGC | 5 cut(s) | 290, 293, 296, 299, 302 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 93, 125 |
| AseI | ATTAAT | 1 cut(s) | 357 |
| AsuHPI | GGTGA | 1 cut(s) | 214 |
| BalI | TGGCCA | 1 cut(s) | 81 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 267, 299, 317, 323, 349, 355 |
| BbvI | GCAGC | 5 cut(s) | 289, 302, 305, 308, 311 |
| BccI | CCATC | 1 cut(s) | 252 |
| BciT130I | CCWGG | 1 cut(s) | 379 |
| BcoDI | GTCTC | 2 cut(s) | 64, 224 |
| BfaI | CTAG | 1 cut(s) | 42 |
| BglII | AGATCT | 1 cut(s) | 192 |
| BisI | GCNGC | 5 cut(s) | 291, 294, 297, 300, 303 |
| BlsI | GCNGC | 5 cut(s) | 292, 295, 298, 301, 304 |
| BmcAI | AGTACT | 1 cut(s) | 335 |
| Bme1390I | CCNGG | 1 cut(s) | 379 |
| BmrFI | CCNGG | 1 cut(s) | 379 |
| BpuEI | CTTGAG | 1 cut(s) | 217 |
| BsaI | GGTCTC | 2 cut(s) | 64, 224 |
| BsaJI | CCNNGG | 2 cut(s) | 180, 377 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 131, 161 |
| Bse1I | ACTGG | 2 cut(s) | 82, 82 |
| BseBI | CCWGG | 1 cut(s) | 379 |
| BseDI | CCNNGG | 2 cut(s) | 180, 377 |
| BseNI | ACTGG | 2 cut(s) | 82, 82 |
| BseXI | GCAGC | 5 cut(s) | 289, 302, 305, 308, 311 |
| BsgI | GTGCAG | 1 cut(s) | 184 |
| BshFI | GGCC | 2 cut(s) | 67, 81 |
| BsmAI | GTCTC | 2 cut(s) | 64, 224 |
| BsnI | GGCC | 2 cut(s) | 67, 81 |
| Bso31I | GGTCTC | 2 cut(s) | 64, 224 |
| Bsp143I | GATC | 2 cut(s) | 192, 201 |
| BspACI | CCGC | 2 cut(s) | 153, 366 |
| BspANI | GGCC | 2 cut(s) | 67, 81 |
| BspHI | TCATGA | 1 cut(s) | 204 |
| BspPI | GGATC | 1 cut(s) | 209 |
| BspTNI | GGTCTC | 2 cut(s) | 64, 224 |
| BsrI | ACTGG | 2 cut(s) | 82, 82 |
| BssECI | CCNNGG | 2 cut(s) | 180, 377 |
| BssMI | GATC | 2 cut(s) | 192, 201 |
| BssT1I | CCWWGG | 1 cut(s) | 180 |
| Bst2UI | CCWGG | 1 cut(s) | 379 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 302 |
| BstC8I | GCNNGC | 2 cut(s) | 57, 167 |
| BstKTI | GATC | 2 cut(s) | 195, 204 |
| BstMAI | GTCTC | 2 cut(s) | 64, 224 |
| BstMBI | GATC | 2 cut(s) | 192, 201 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 296, 299, 302, 308 |
| BstNI | CCWGG | 1 cut(s) | 379 |
| BstSCI | CCNGG | 1 cut(s) | 377 |
| BstV1I | GCAGC | 5 cut(s) | 289, 302, 305, 308, 311 |
| BstX2I | RGATCY | 1 cut(s) | 192 |
| BstYI | RGATCY | 1 cut(s) | 192 |
| BsuRI | GGCC | 2 cut(s) | 67, 81 |
| Cac8I | GCNNGC | 2 cut(s) | 57, 167 |
| CaiI | CAGNNNCTG | 1 cut(s) | 302 |
| CciI | TCATGA | 1 cut(s) | 204 |
| Csp6I | GTAC | 2 cut(s) | 256, 334 |
| CviAII | CATG | 5 cut(s) | 205, 226, 233, 265, 272 |
| CviJI | RGCY | 7 cut(s) | 36, 59, 67, 81, 243, 302, 363 |
| CviKI_1 | RGCY | 7 cut(s) | 36, 59, 67, 81, 243, 302, 363 |
| CviQI | GTAC | 2 cut(s) | 256, 334 |
| DpnI | GATC | 2 cut(s) | 194, 203 |
| DpnII | GATC | 2 cut(s) | 192, 201 |
| EaeI | YGGCCR | 1 cut(s) | 79 |
| Eco130I | CCWWGG | 1 cut(s) | 180 |
| Eco31I | GGTCTC | 2 cut(s) | 64, 224 |
| Eco32I | GATATC | 1 cut(s) | 177 |
| Eco57I | CTGAAG | 1 cut(s) | 233 |
| EcoRII | CCWGG | 1 cut(s) | 377 |
| EcoRV | GATATC | 1 cut(s) | 177 |
| EcoT14I | CCWWGG | 1 cut(s) | 180 |
| ErhI | CCWWGG | 1 cut(s) | 180 |
| FaeI | CATG | 5 cut(s) | 208, 229, 236, 268, 275 |
| FaiI | YATR | 8 cut(s) | 95, 108, 206, 227, 234, 266, 273, 284 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 179, 211 |
| FatI | CATG | 5 cut(s) | 204, 225, 232, 264, 271 |
| Fnu4HI | GCNGC | 5 cut(s) | 291, 294, 297, 300, 303 |
| Fsp4HI | GCNGC | 5 cut(s) | 291, 294, 297, 300, 303 |
| FspBI | CTAG | 1 cut(s) | 42 |
| GluI | GCNGC | 5 cut(s) | 291, 294, 297, 300, 303 |
| HaeIII | GGCC | 2 cut(s) | 67, 81 |
| Hin1II | CATG | 5 cut(s) | 208, 229, 236, 268, 275 |
| HincII | GTYRAC | 1 cut(s) | 87 |
| HindII | GTYRAC | 1 cut(s) | 87 |
| HinfI | GANTC | 5 cut(s) | 20, 49, 129, 229, 350 |
| HpaI | GTTAAC | 1 cut(s) | 87 |
| HphI | GGTGA | 1 cut(s) | 214 |
| Hpy166II | GTNNAC | 1 cut(s) | 87 |
| Hpy188I | TCNGA | 2 cut(s) | 118, 252 |
| Hpy188III | TCNNGA | 2 cut(s) | 196, 205 |
| Hpy8I | GTNNAC | 1 cut(s) | 87 |
| HpyAV | CCTTC | 3 cut(s) | 23, 209, 319 |
| HpyCH4V | TGCA | 2 cut(s) | 165, 305 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 296, 299, 302, 308 |
| Hsp92II | CATG | 5 cut(s) | 208, 229, 236, 268, 275 |
| KspAI | GTTAAC | 1 cut(s) | 87 |
| Kzo9I | GATC | 2 cut(s) | 192, 201 |
| LmnI | GCTCC | 3 cut(s) | 33, 119, 368 |
| LpnPI | CCDG | 7 cut(s) | 63, 69, 95, 120, 151, 360, 364 |
| Lsp1109I | GCAGC | 5 cut(s) | 289, 302, 305, 308, 311 |
| MaeI | CTAG | 1 cut(s) | 42 |
| MalI | GATC | 2 cut(s) | 194, 203 |
| MboI | GATC | 2 cut(s) | 192, 201 |
| MboII | GAAGA | 5 cut(s) | 58, 199, 202, 239, 287 |
| MflI | RGATCY | 1 cut(s) | 192 |
| MlsI | TGGCCA | 1 cut(s) | 81 |
| MluCI | AATT | 1 cut(s) | 354 |
| MluNI | TGGCCA | 1 cut(s) | 81 |
| MnlI | CCTC | 3 cut(s) | 135, 152, 192 |
| Mox20I | TGGCCA | 1 cut(s) | 81 |
| MscI | TGGCCA | 1 cut(s) | 81 |
| MseI | TTAA | 2 cut(s) | 86, 357 |
| Msp20I | TGGCCA | 1 cut(s) | 81 |
| MspA1I | CMGCKG | 3 cut(s) | 59, 155, 302 |
| MspR9I | CCNGG | 1 cut(s) | 379 |
| MvaI | CCWGG | 1 cut(s) | 379 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 296, 299, 302, 308 |
| NdeII | GATC | 2 cut(s) | 192, 201 |
| NlaIII | CATG | 5 cut(s) | 208, 229, 236, 268, 275 |
| NmeAIII | GCCGAG | 1 cut(s) | 93 |
| PagI | TCATGA | 1 cut(s) | 204 |
| PfeI | GAWTC | 5 cut(s) | 20, 49, 129, 229, 350 |
| PkrI | GCNGC | 5 cut(s) | 292, 295, 298, 301, 304 |
| PshBI | ATTAAT | 1 cut(s) | 357 |
| Psp6I | CCWGG | 1 cut(s) | 377 |
| PspGI | CCWGG | 1 cut(s) | 377 |
| PstNI | CAGNNNCTG | 1 cut(s) | 302 |
| PsuI | RGATCY | 1 cut(s) | 192 |
| PvuII | CAGCTG | 2 cut(s) | 59, 302 |
| RsaI | GTAC | 2 cut(s) | 257, 335 |
| RsaNI | GTAC | 2 cut(s) | 256, 334 |
| SaqAI | TTAA | 2 cut(s) | 86, 357 |
| SatI | GCNGC | 5 cut(s) | 291, 294, 297, 300, 303 |
| Sau3AI | GATC | 2 cut(s) | 192, 201 |
| ScaI | AGTACT | 1 cut(s) | 335 |
| ScrFI | CCNGG | 1 cut(s) | 379 |
| SmlI | CTYRAG | 1 cut(s) | 196 |
| SmoI | CTYRAG | 1 cut(s) | 196 |
| Sse9I | AATT | 1 cut(s) | 354 |
| SsiI | CCGC | 2 cut(s) | 153, 366 |
| SspMI | CTAG | 1 cut(s) | 42 |
| StyD4I | CCNGG | 1 cut(s) | 377 |
| StyI | CCWWGG | 1 cut(s) | 180 |
| TaqI | TCGA | 1 cut(s) | 127 |
| TasI | AATT | 1 cut(s) | 354 |
| TatI | WGTACW | 2 cut(s) | 255, 333 |
| TfiI | GAWTC | 5 cut(s) | 20, 49, 129, 229, 350 |
| Tru1I | TTAA | 2 cut(s) | 86, 357 |
| Tru9I | TTAA | 2 cut(s) | 86, 357 |
| TseI | GCWGC | 5 cut(s) | 290, 293, 296, 299, 302 |
| TspDTI | ATGAA | 4 cut(s) | 221, 242, 281, 288 |
| VspI | ATTAAT | 1 cut(s) | 357 |
| XspI | CTAG | 1 cut(s) | 42 |
| ZrmI | AGTACT | 1 cut(s) | 335 |