Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Reverse (-)

52093287 .. 52093616

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG367900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGATCAAGATTATTTTTGATATGCAGGTTCGGAAACCTGATGATAGCATAAATGGCGAAACATTTGGAGCAGAAGTTGGTGATAATATGCACACTTTGAAACAAAAGAAATGGTTACCTTTGAATTTACAGTTGGGCCTTCGGCAAGAATTCAGTATCTGCAGTGACGAGATGAAGGATGGTGAACAAGAAAGCACGAGAGACATTGAAACAACGCTTTCTCTATCTTTATCCTCGTCCTCACCAAGGCAACAAGATCAATCCAGTACACCCACATCAAGAGTTCGACACTTGTCATTTCCTCTCTCTCCTGGCCTTAAACCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

109

Amino Acids

12.26

Weight (kDa)

5.63

Isoelectric Point (pI)

59.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	124, 149
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	100, 124, 209
AjnI	CCWGG	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
Alw26I	GTCTC	1 cut(s)	195
AlwNI	CAGNNNCTG	1 cut(s)	159
AoxI	GGCC	2 cut(s)	136, 313
ApoI	RAATTY	2 cut(s)	124, 149
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	3 cut(s)	92, 194, 234
BauI	CACGAG	1 cut(s)	196
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	312
BoxI	GACNNNNGTC	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	138, 315
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	138, 315
Bsp143I	GATC	2 cut(s)	3, 256
BspANI	GGCC	2 cut(s)	138, 315
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	3, 256
BssSI	CACGAG	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	114
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	6, 259
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	2 cut(s)	3, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	312
BstPAI	GACNNNNGTC	1 cut(s)	292
BstPI	GGTNACC	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	138, 315
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	267
CviJI	RGCY	2 cut(s)	138, 315
CviKI_1	RGCY	2 cut(s)	138, 315
CviQI	GTAC	1 cut(s)	267
DpnI	GATC	2 cut(s)	5, 258
DpnII	GATC	2 cut(s)	3, 256
Eco130I	CCWWGG	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	114
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaiI	YATR	3 cut(s)	23, 50, 89
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	138, 315
HphI	GGTGA	3 cut(s)	92, 194, 234
Hpy166II	GTNNAC	2 cut(s)	185, 269
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	2 cut(s)	7, 279
Hpy8I	GTNNAC	2 cut(s)	185, 269
HpyAV	CCTTC	2 cut(s)	149, 169
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	25, 91, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 256
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	5 cut(s)	11, 51, 277, 297, 324
MaeIII	GTNAC	2 cut(s)	114, 164
MalI	GATC	2 cut(s)	5, 258
MboI	GATC	2 cut(s)	3, 256
MluCI	AATT	2 cut(s)	124, 149
MnlI	CCTC	3 cut(s)	244, 250, 312
MseI	TTAA	2 cut(s)	318, 328
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	2 cut(s)	3, 256
NmuCI	GTSAC	1 cut(s)	164
PshAI	GACNNNNGTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	310
PspEI	GGTNACC	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	159
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	318, 328
Sau3AI	GATC	2 cut(s)	3, 256
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	4 cut(s)	30, 40, 121, 325
SfcI	CTRYAG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	124, 149
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	286
TasI	AATT	2 cut(s)	124, 149
TatI	WGTACW	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	318, 328
Tru9I	TTAA	2 cut(s)	318, 328
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	244
XapI	RAATTY	2 cut(s)	124, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.