Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001647.1

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Forward (+)

25266 .. 25562

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001647.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggcaacaaacagggttgaattaggtgaagggagctctcttaggggatcaaacaggggtgaacaattacaattacaaagcactccacatttctcatcctatgagaatcaagaaaggaagactgaacctcagcataagggagttcgccgtgtgaatttacaagctgaaaggatgatcatgccgagacctactggccggttagctgctatggttagaccttatgttcgctctaaagtgccttggattcactggacacctcatctccaccgctgttttgtgcatgcagttgatatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

98

Amino Acids

11.38

Weight (kDa)

10.8

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	20
AluBI	AGCT	3 cut(s)	36, 164, 203
AluI	AGCT	3 cut(s)	36, 164, 203
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
AsuHPI	GGTGA	2 cut(s)	38, 71
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	132
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	2 cut(s)	196, 254
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	2 cut(s)	95, 177
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	196, 254
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	47, 174
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	196, 254
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	2 cut(s)	47, 174
BssT1I	CCWWGG	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	41, 129
BstF5I	GGATG	2 cut(s)	95, 177
BstKTI	GATC	2 cut(s)	50, 177
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	47, 174
BstNSI	RCATGY	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	95, 177
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	195
CviAII	CATG	2 cut(s)	178, 281
CviJI	RGCY	4 cut(s)	36, 164, 195, 203
CviKI_1	RGCY	4 cut(s)	36, 164, 195, 203
DdeI	CTNAG	2 cut(s)	41, 129
DpnI	GATC	2 cut(s)	49, 176
DpnII	GATC	2 cut(s)	47, 174
EaeI	YGGCCR	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	2 cut(s)	181, 284
FaiI	YATR	6 cut(s)	102, 135, 179, 209, 222, 282
FatI	CATG	2 cut(s)	177, 280
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	2 cut(s)	82, 184
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	196
Hin1II	CATG	2 cut(s)	181, 284
HinfI	GANTC	2 cut(s)	106, 244
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	2 cut(s)	38, 71
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	280, 284
HpyF3I	CTNAG	2 cut(s)	41, 129
Hsp92II	CATG	2 cut(s)	181, 284
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	47, 174
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	40, 177, 209, 235
Lsp1109I	GCAGC	1 cut(s)	190
MalI	GATC	2 cut(s)	49, 176
MboI	GATC	2 cut(s)	47, 174
MboII	GAAGA	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	4 cut(s)	20, 65, 71, 154
MnlI	CCTC	2 cut(s)	138, 267
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	1 cut(s)	196
NdeII	GATC	2 cut(s)	47, 174
NlaIII	CATG	2 cut(s)	181, 284
NmeAIII	GCCGAG	1 cut(s)	207
NspI	RCATGY	1 cut(s)	284
PaeI	GCATGC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	106, 244
PkrI	GCNGC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	38
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	47, 174
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	28, 38, 130, 166, 190, 205, 220, 259
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	4 cut(s)	20, 65, 71, 154
SsiI	CCGC	1 cut(s)	268
SstI	GAGCTC	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	239
TasI	AATT	4 cut(s)	20, 65, 71, 154
TfiI	GAWTC	2 cut(s)	106, 244
TscAI	CASTG	1 cut(s)	254
TseI	GCWGC	1 cut(s)	203
TspRI	CASTG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.