Rh5DG194000
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001787
Physical Location & Seq
Forward (+)
21557120 .. 21558616
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG194000.1

Sequence Viewer

Length: 543 bp
ATGGTTAGACCTTATGTTCGCTCTAAAGTGCCTCGGATTCACTGGACACCTGATCTCCACCGCTGTTTTGTGCATGCAGTTGATATCCTTGGAGGAGCAGACAGAGCTACTCCAAAGAAGATCTTGCGAATCATGAATGTTAAAGGTCTCACCATGAATCATATAAAAAGCCATCTTCAGATGTACAGAAACATGAAAGATGAAGAATTAGTACAAGAAGCAGCAGCTGCAAGAGCGGAGGCGAATGAGAAGGGGAAGCACTCCTCGCATTCAAATGACTCGTACCTAACTGAATCAATCAATAGCTCCGCTACTCCACCCTGGAAAGATGAGAAGAAAACGAAATCTTACCTCATCTTTACAGATCTATTTCAGGGATTAACCAATAATACTCGAGAAAGCAATGATGATGAAGGGACTGATGCTAATATTCGAGGAGCTATTGATGCCACAATGCCTCAGACACTAAACTCATCATCAAATGCTGGGAGTATTTCTAATGTAAATGATGTCTCCCTTGAACTCGAGCTCACTCTTGGTTAA

Protein Analysis

180

Amino Acids

20.05

Weight (kDa)

6.65

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 63 1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 236
AciI CCGC 3 cut(s) 61, 236, 309
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 3 cut(s) 185, 213, 284
AgsI TTSAA 2 cut(s) 273, 521
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 5 cut(s) 107, 227, 306, 440, 529
AluI AGCT 5 cut(s) 107, 227, 306, 440, 529
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 2 cut(s) 152, 517
AlwNI CAGNNNCTG 1 cut(s) 227
Ama87I CYCGRG 2 cut(s) 393, 524
ApeKI GCWGC 3 cut(s) 221, 224, 227
ArsI GACNNNNNNTTYG 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 142
AvaI CYCGRG 2 cut(s) 393, 524
BanII GRGCYC 1 cut(s) 531
BarI GAAGNNNNNNTAC 2 cut(s) 195, 227
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 3 cut(s) 214, 233, 236
BccI CCATC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 152, 517
BglII AGATCT 2 cut(s) 120, 364
BisI GCNGC 3 cut(s) 222, 225, 228
BlsI GCNGC 3 cut(s) 223, 226, 229
Bme1390I CCNGG 1 cut(s) 322
BmeT110I CYCGRG 2 cut(s) 393, 524
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 2 cut(s) 412, 436
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 32, 88, 320
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 409
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 3 cut(s) 32, 88, 320
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 3 cut(s) 108, 253, 450
BseXI GCAGC 3 cut(s) 214, 233, 236
BseYI CCCAGC 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 531
BsiHKCI CYCGRG 2 cut(s) 393, 524
BslFI GGGAC 1 cut(s) 430
BsmAI GTCTC 2 cut(s) 152, 517
BsmFI GGGAC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 2 cut(s) 393, 524
Bsp1286I GDGCHC 1 cut(s) 531
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 3 cut(s) 52, 120, 364
BspACI CCGC 3 cut(s) 61, 236, 309
BspCNI CTCAG 1 cut(s) 472
BspHI TCATGA 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 409
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 32, 88, 320
BssMI GATC 3 cut(s) 52, 120, 364
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 322
BstAPI GCANNNNNTGC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 459
BstKTI GATC 3 cut(s) 55, 123, 367
BstMAI GTCTC 2 cut(s) 152, 517
BstMBI GATC 3 cut(s) 52, 120, 364
BstMWI GCNNNNNNNGC 5 cut(s) 104, 227, 233, 265, 446
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 320
BstV1I GCAGC 3 cut(s) 214, 233, 236
BstX2I RGATCY 2 cut(s) 120, 364
BstYI RGATCY 2 cut(s) 120, 364
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 227
CciI TCATGA 1 cut(s) 132
Csp6I GTAC 3 cut(s) 184, 212, 283
CviAII CATG 4 cut(s) 74, 133, 154, 193
CviJI RGCY 6 cut(s) 107, 171, 227, 306, 440, 529
CviKI_1 RGCY 6 cut(s) 107, 171, 227, 306, 440, 529
CviQI GTAC 3 cut(s) 184, 212, 283
DdeI CTNAG 1 cut(s) 459
DpnI GATC 3 cut(s) 54, 122, 366
DpnII GATC 3 cut(s) 52, 120, 364
Ecl136II GAGCTC 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 531
Eco31I GGTCTC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 529
Eco57I CTGAAG 1 cut(s) 161
Eco88I CYCGRG 2 cut(s) 393, 524
EcoICRI GAGCTC 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 320
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 4 cut(s) 77, 136, 157, 196
FaiI YATR 7 cut(s) 15, 75, 134, 155, 162, 164, 194
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 430
FatI CATG 4 cut(s) 73, 132, 153, 192
Fnu4HI GCNGC 3 cut(s) 222, 225, 228
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 3 cut(s) 222, 225, 228
GluI GCNGC 3 cut(s) 222, 225, 228
GsaI CCCAGC 1 cut(s) 489
Hin1II CATG 4 cut(s) 77, 136, 157, 196
HinfI GANTC 5 cut(s) 37, 129, 157, 278, 293
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 36, 180, 462
Hpy188III TCNNGA 2 cut(s) 133, 395
HpyAV CCTTC 2 cut(s) 244, 407
HpyCH4V TGCA 3 cut(s) 73, 77, 230
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 227, 233, 265, 446
HpyF3I CTNAG 1 cut(s) 459
Hsp92II CATG 4 cut(s) 77, 136, 157, 196
Kzo9I GATC 3 cut(s) 52, 120, 364
LmnI GCTCC 3 cut(s) 95, 311, 437
LpnPI CCDG 6 cut(s) 28, 63, 307, 334, 359, 471
Lsp1109I GCAGC 3 cut(s) 214, 233, 236
LweI GCATC 2 cut(s) 412, 436
MalI GATC 3 cut(s) 54, 122, 366
MbiI CCGCTC 1 cut(s) 236
MboI GATC 3 cut(s) 52, 120, 364
MboII GAAGA 4 cut(s) 130, 167, 215, 346
MflI RGATCY 2 cut(s) 120, 364
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 1 cut(s) 206
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 7 cut(s) 42, 86, 232, 274, 362, 428, 468
MseI TTAA 3 cut(s) 141, 380, 541
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 2 cut(s) 63, 227
MspR9I CCNGG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 5 cut(s) 104, 227, 233, 265, 446
NdeII GATC 3 cut(s) 52, 120, 364
NlaIII CATG 4 cut(s) 77, 136, 157, 196
NspI RCATGY 1 cut(s) 77
PaeI GCATGC 1 cut(s) 77
PaeR7I CTCGAG 2 cut(s) 393, 524
PagI TCATGA 1 cut(s) 132
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 4 cut(s) 37, 129, 157, 293
PkrI GCNGC 3 cut(s) 223, 226, 229
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 485
PspGI CCWGG 1 cut(s) 320
PspXI VCTCGAGB 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 2 cut(s) 120, 364
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 3 cut(s) 185, 213, 284
RsaNI GTAC 3 cut(s) 184, 212, 283
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 531
SaqAI TTAA 3 cut(s) 141, 380, 541
SatI GCNGC 3 cut(s) 222, 225, 228
Sau3AI GATC 3 cut(s) 52, 120, 364
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 1 cut(s) 531
SfaNI GCATC 2 cut(s) 412, 436
Sfr274I CTCGAG 2 cut(s) 393, 524
SlaI CTCGAG 2 cut(s) 393, 524
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 393, 524
SmoI CTYRAG 2 cut(s) 393, 524
SphI GCATGC 1 cut(s) 77
Sse9I AATT 1 cut(s) 206
SsiI CCGC 3 cut(s) 61, 236, 309
SspI AATATT 1 cut(s) 430
SstI GAGCTC 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 88
TaqI TCGA 3 cut(s) 394, 433, 525
TasI AATT 1 cut(s) 206
TatI WGTACW 2 cut(s) 183, 211
TfiI GAWTC 4 cut(s) 37, 129, 157, 293
Tru1I TTAA 3 cut(s) 141, 380, 541
Tru9I TTAA 3 cut(s) 141, 380, 541
TscAI CASTG 1 cut(s) 47
TseI GCWGC 3 cut(s) 221, 224, 227
TspDTI ATGAA 5 cut(s) 149, 170, 209, 216, 426
TspRI CASTG 1 cut(s) 47
XceI RCATGY 1 cut(s) 77
XhoI CTCGAG 2 cut(s) 393, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.