Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Reverse (-)

1608649 .. 1610879

Gene Structure 2231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG022700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAATGTGAAGGGCCTTACCATATCTCATATAAAAAGCCATCTTCAGATGTACAGGAGCATGAAGCATGAAAAACGCATACAAGAAGCGGCTATAGCAGCAAAGAGGAACGATAAGGCAAATCCCTCGGACTCAAACAATTCATACTGGCTAAATTCAAATAATTCAAATAAGAGTACTGCTACTCCCCCTACTTATTGCCAAAGGAGCAATTGGATGATGAGAAACATGTACAATAGTGCACCCTACCAAAGCAATAGAAGCTACATTGAAGGAATTGATCACAAGAATACGACCACCCTGGCAAAATGGAACAATGAGAATTACAGACAGAATTCTTACTTCATATTCACTGATCTAGTCAAAAGAGGCAGTGATGATGCTCAAGACAGCAATGATCAAGTGAAAGTACTGTCATTAGTCAATGCTGGTTGCCAAAGCAATCATAGTAAACCGGAAGATTTAGGTGGTGAAACTGAAACTGGAGCAGAGATTGATGCTGCAATGTCTCCATCACTCAAATCGTCATCAAAGGCTTATTATTCGCAGCAGTTCAGGCCAAGCGACTCTGAGAATTCAGTTGTGAATGATGTCTCTCTTGAACTTAGTCTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

205

Amino Acids

23.09

Weight (kDa)

7.75

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AcsI	RAATTY	3 cut(s)	154, 334, 574
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	4 cut(s)	53, 178, 233, 411
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	4 cut(s)	159, 168, 272, 602
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	2 cut(s)	513, 598
Alw44I	GTGCAC	1 cut(s)	240
AoxI	GGCC	2 cut(s)	13, 557
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	3 cut(s)	98, 500, 547
ApoI	RAATTY	3 cut(s)	154, 334, 574
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	110, 487, 559
BccI	CCATC	2 cut(s)	48, 520
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	1 cut(s)	302
BclI	TGATCA	2 cut(s)	280, 397
BcoDI	GTCTC	2 cut(s)	513, 598
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	4 cut(s)	90, 99, 501, 548
BlsI	GCNGC	4 cut(s)	91, 100, 502, 549
BmcAI	AGTACT	2 cut(s)	178, 411
Bme1390I	CCNGG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	2 cut(s)	370, 487
BpmI	CTGGAG	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	126, 300
BsaWI	WCCGGW	1 cut(s)	454
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bse1I	ACTGG	2 cut(s)	152, 487
Bse3DI	GCAATG	2 cut(s)	400, 510
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	126, 300
BseGI	GGATG	1 cut(s)	222
BseMI	GCAATG	2 cut(s)	400, 510
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	2 cut(s)	152, 487
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	3 cut(s)	110, 487, 559
BshFI	GGCC	2 cut(s)	15, 559
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	455
BsmAI	GTCTC	2 cut(s)	513, 598
BsnI	GGCC	2 cut(s)	15, 559
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp1407I	TGTACA	2 cut(s)	51, 231
Bsp143I	GATC	3 cut(s)	280, 355, 397
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	2 cut(s)	15, 559
BspCNI	CTCAG	1 cut(s)	562
BsrDI	GCAATG	2 cut(s)	400, 510
BsrGI	TGTACA	2 cut(s)	51, 231
BsrI	ACTGG	2 cut(s)	152, 487
BssECI	CCNNGG	2 cut(s)	126, 300
BssMI	GATC	3 cut(s)	280, 355, 397
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	414
BstAUI	TGTACA	2 cut(s)	51, 231
BstDEI	CTNAG	2 cut(s)	570, 605
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	3 cut(s)	283, 358, 400
BstMAI	GTCTC	2 cut(s)	513, 598
BstMBI	GATC	3 cut(s)	280, 355, 397
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 98, 207, 261, 556
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	3 cut(s)	110, 487, 559
BsuRI	GGCC	2 cut(s)	15, 559
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	2 cut(s)	351, 379
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	4 cut(s)	52, 177, 232, 410
CviAII	CATG	3 cut(s)	61, 68, 229
CviJI	RGCY	7 cut(s)	15, 39, 92, 151, 264, 536, 559
CviKI_1	RGCY	7 cut(s)	15, 39, 92, 151, 264, 536, 559
CviQI	GTAC	4 cut(s)	52, 177, 232, 410
DdeI	CTNAG	2 cut(s)	570, 605
DpnI	GATC	3 cut(s)	282, 357, 399
DpnII	GATC	3 cut(s)	280, 355, 397
Eco57I	CTGAAG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRI	GAATTC	2 cut(s)	334, 574
EcoRII	CCWGG	1 cut(s)	300
FaeI	CATG	3 cut(s)	64, 71, 232
FatI	CATG	3 cut(s)	60, 67, 228
FbaI	TGATCA	2 cut(s)	280, 397
Fnu4HI	GCNGC	4 cut(s)	90, 99, 501, 548
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	4 cut(s)	90, 99, 501, 548
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	4 cut(s)	90, 99, 501, 548
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	15, 559
HapII	CCGG	1 cut(s)	455
Hin1II	CATG	3 cut(s)	64, 71, 232
HinfI	GANTC	2 cut(s)	131, 566
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	2 cut(s)	242, 452
Hpy188I	TCNGA	3 cut(s)	48, 130, 571
Hpy188III	TCNNGA	2 cut(s)	386, 599
Hpy8I	GTNNAC	2 cut(s)	242, 452
HpyAV	CCTTC	2 cut(s)	4, 266
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4V	TGCA	2 cut(s)	242, 503
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 98, 207, 261, 556
HpyF3I	CTNAG	2 cut(s)	570, 605
Hsp92II	CATG	3 cut(s)	64, 71, 232
Ksp22I	TGATCA	2 cut(s)	280, 397
Kzo9I	GATC	3 cut(s)	280, 355, 397
LmnI	GCTCC	3 cut(s)	57, 207, 485
LpnPI	CCDG	8 cut(s)	40, 133, 287, 314, 414, 468, 468, 541
Lsp1109I	GCAGC	3 cut(s)	110, 487, 559
LweI	GCATC	2 cut(s)	370, 487
MaeI	CTAG	1 cut(s)	359
MalI	GATC	3 cut(s)	282, 357, 399
MboI	GATC	3 cut(s)	280, 355, 397
MboII	GAAGA	2 cut(s)	35, 470
MfeI	CAATTG	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	8 cut(s)	139, 154, 163, 211, 276, 322, 334, 574
MlyI	GAGTC	2 cut(s)	125, 560
MnlI	CCTC	3 cut(s)	99, 136, 362
MseI	TTAA	1 cut(s)	616
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	5 cut(s)	95, 98, 207, 261, 556
NdeII	GATC	3 cut(s)	280, 355, 397
NlaIII	CATG	3 cut(s)	64, 71, 232
NspI	RCATGY	1 cut(s)	232
PciI	ACATGT	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	91, 100, 502, 549
PleI	GAGTC	2 cut(s)	125, 560
PpsI	GAGTC	2 cut(s)	125, 560
PscI	ACATGT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	13
RsaI	GTAC	4 cut(s)	53, 178, 233, 411
RsaNI	GTAC	4 cut(s)	52, 177, 232, 410
SaqAI	TTAA	1 cut(s)	616
SatI	GCNGC	4 cut(s)	90, 99, 501, 548
Sau3AI	GATC	3 cut(s)	280, 355, 397
Sau96I	GGNCC	1 cut(s)	13
ScaI	AGTACT	2 cut(s)	178, 411
SchI	GAGTC	2 cut(s)	125, 560
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	2 cut(s)	266, 469
SfaNI	GCATC	2 cut(s)	370, 487
SfcI	CTRYAG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	8 cut(s)	139, 154, 163, 211, 276, 322, 334, 574
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	414
TasI	AATT	8 cut(s)	139, 154, 163, 211, 276, 322, 334, 574
TatI	WGTACW	4 cut(s)	51, 176, 231, 409
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	616
Tru9I	TTAA	1 cut(s)	616
TscAI	CASTG	2 cut(s)	358, 379
TseI	GCWGC	3 cut(s)	98, 500, 547
TspDTI	ATGAA	5 cut(s)	17, 77, 84, 132, 334
TspRI	CASTG	2 cut(s)	358, 379
VneI	GTGCAC	1 cut(s)	240
XapI	RAATTY	3 cut(s)	154, 334, 574
XceI	RCATGY	1 cut(s)	232
XspI	CTAG	1 cut(s)	359
ZrmI	AGTACT	2 cut(s)	178, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.