Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Forward (+)

494745 .. 497860

Gene Structure 3116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGTAAGTCTAGTGGTAGAAATGGTAACGGAAGCTTTAACGGCAATAAATTTCACGGAGTTAGACCTTACGTACGGTCTCCAGTTCCACGGCTTAGATGGACGCCGGATCTTCACCGTTGTTTCGTTCACGCCGTCGAGATTCTCGGTGGTCAACACCGAGCAACACCAAAACTTGTTCTTAAGATGATGGATGTGAAGGGACTTACCATTTCACATGTCAAAAGCCACCTTCAGATGTATAGAGGAGGTTCAAAGCTCACTTTGGAGAAACCAGAAGAAAGCTCATCATCTTCAATAAGAAGAAGACAAGACAGTGAAGAAGATTATTATCTTCATGACAACTTGTCTTTACACACAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTTCCTCTTTCTTCACATTCTTCATTTAGAGGAGGAGGAGGAGGAAGAACAAAAGAGCAGCAGACTTCAGAGTCTGGTGGTTATGATGATGATGCTGACTTTCTTCACATCAAGAAGATGAACGATACGACGACGTTTTTGTCACATCATTTCCCCAAGGGAACAGAGGAGTGGCGGGAACAAGAACACGAAGAAGAAGAAGAAGATTTGTCGTTGTCTCTGTCGTTAAATCATCATCATTGGAGAAGCAATGGATCATCGGTGGTGAGCGAAACGAGTGAAGCAGCAGTCTCGACTTGTTCAGCACCATTCGTATCCAAAGATTGCTTTGGTTCTTCAAAGATTGATCTTAATCTGTCAATTTCTCTCCTCGGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

256

Amino Acids

28.61

Weight (kDa)

6.62

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	460, 529
AciI	CCGC	1 cut(s)	565
AclWI	GGATC	2 cut(s)	117, 652
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	2 cut(s)	218, 441
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	75
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	3 cut(s)	255, 297, 729
AhdI	GACNNNNNGTC	1 cut(s)	346
AluBI	AGCT	4 cut(s)	36, 259, 285, 768
AluI	AGCT	4 cut(s)	36, 259, 285, 768
Alw26I	GTCTC	3 cut(s)	84, 612, 685
AlwI	GGATC	2 cut(s)	117, 652
AlwNI	CAGNNNCTG	1 cut(s)	464
ApeKI	GCWGC	2 cut(s)	448, 674
ApoI	RAATTY	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	511, 543
AsuHPI	GGTGA	2 cut(s)	107, 667
BbsI	GAAGAC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	460, 686
BccI	CCATC	2 cut(s)	93, 184
BceAI	ACGGC	3 cut(s)	58, 107, 119
BcgI	CGANNNNNNTGC	2 cut(s)	663, 697
BciVI	GTATCC	1 cut(s)	715
BcoDI	GTCTC	3 cut(s)	84, 612, 685
BfaI	CTAG	1 cut(s)	12
BfrI	CTTAAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	715
BisI	GCNGC	2 cut(s)	449, 675
BlsI	GCNGC	2 cut(s)	450, 676
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	73
BsaBI	GATNNNNATC	2 cut(s)	330, 741
BsaHI	GRCGYC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	89, 546, 760
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	646
Bse8I	GATNNNNATC	2 cut(s)	330, 741
BseDI	CCNNGG	3 cut(s)	89, 546, 760
BseGI	GGATG	1 cut(s)	199
BseJI	GATNNNNATC	2 cut(s)	330, 741
BseMI	GCAATG	1 cut(s)	646
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	7 cut(s)	261, 435, 438, 441, 444, 572, 749
BseXI	GCAGC	2 cut(s)	460, 686
BsiSI	CCGG	1 cut(s)	107
BsiWI	CGTACG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	216
BsmAI	GTCTC	3 cut(s)	84, 612, 685
BsmFI	GGGAC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	109, 644, 736
BspACI	CCGC	1 cut(s)	565
BspHI	TCATGA	1 cut(s)	337
BspPI	GGATC	2 cut(s)	117, 652
BspTI	CTTAAG	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	646
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	89, 546, 760
BssMI	GATC	3 cut(s)	109, 644, 736
BssNI	GRCGYC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	546
Bst4CI	ACNGT	3 cut(s)	78, 119, 317
BstACI	GRCGYC	1 cut(s)	104
BstAFI	CTTAAG	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	3 cut(s)	112, 647, 739
BstMAI	GTCTC	3 cut(s)	84, 612, 685
BstMBI	GATC	3 cut(s)	109, 644, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	221
BstSNI	TACGTA	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	460, 686
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	715
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	337
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	218, 338
CviJI	RGCY	6 cut(s)	36, 94, 228, 259, 285, 768
CviKI_1	RGCY	6 cut(s)	36, 94, 228, 259, 285, 768
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	3 cut(s)	111, 646, 738
DpnII	GATC	3 cut(s)	109, 644, 736
DrdI	GACNNNNNNGTC	2 cut(s)	460, 529
DriI	GACNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	2 cut(s)	460, 529
Eam1105I	GACNNNNNGTC	1 cut(s)	346
Eco105I	TACGTA	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	84
Eco57I	CTGAAG	2 cut(s)	218, 441
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	2 cut(s)	221, 341
FaiI	YATR	4 cut(s)	219, 243, 339, 474
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	2 cut(s)	217, 337
FauI	CCCGC	1 cut(s)	558
Fnu4HI	GCNGC	2 cut(s)	449, 675
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	449, 675
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	2 cut(s)	449, 675
GsuI	CTGGAG	1 cut(s)	66
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	221, 341
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	142, 461
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	2 cut(s)	107, 667
Hpy166II	GTNNAC	2 cut(s)	130, 155
Hpy188I	TCNGA	2 cut(s)	237, 460
Hpy188III	TCNNGA	4 cut(s)	139, 338, 502, 682
Hpy8I	GTNNAC	2 cut(s)	130, 155
Hpy99I	CGWCG	3 cut(s)	140, 523, 526
HpyAV	CCTTC	2 cut(s)	193, 242
HpyCH4III	ACNGT	3 cut(s)	78, 119, 317
HpyCH4IV	ACGT	2 cut(s)	72, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	2 cut(s)	72, 524
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	221, 341
Kzo9I	GATC	3 cut(s)	109, 644, 736
LpnPI	CCDG	4 cut(s)	96, 120, 288, 450
Lsp1109I	GCAGC	2 cut(s)	460, 686
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	2 cut(s)	72, 524
MaeIII	GTNAC	2 cut(s)	26, 531
MalI	GATC	3 cut(s)	111, 646, 738
MboI	GATC	3 cut(s)	109, 644, 736
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	2 cut(s)	50, 750
MlyI	GAGTC	1 cut(s)	470
MseI	TTAA	4 cut(s)	39, 183, 617, 741
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	3 cut(s)	109, 644, 736
NlaIII	CATG	2 cut(s)	221, 341
NmuCI	GTSAC	1 cut(s)	531
NspI	RCATGY	1 cut(s)	221
PagI	TCATGA	1 cut(s)	337
PciI	ACATGT	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	142
Pfl23II	CGTACG	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	450, 676
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
Ppu21I	YACGTR	1 cut(s)	73
PscI	ACATGT	1 cut(s)	217
PspLI	CGTACG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	4 cut(s)	39, 183, 617, 741
SatI	GCNGC	2 cut(s)	449, 675
Sau3AI	GATC	3 cut(s)	109, 644, 736
SchI	GAGTC	1 cut(s)	470
SetI	ASST	9 cut(s)	38, 70, 75, 234, 253, 261, 287, 527, 770
SfaNI	GCATC	1 cut(s)	472
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SnaBI	TACGTA	1 cut(s)	73
Sse9I	AATT	2 cut(s)	50, 750
SsiI	CCGC	1 cut(s)	565
SspMI	CTAG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	3 cut(s)	78, 119, 317
TaiI	ACGT	2 cut(s)	75, 527
TaqI	TCGA	2 cut(s)	138, 683
TasI	AATT	2 cut(s)	50, 750
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	4 cut(s)	39, 183, 617, 741
Tru9I	TTAA	4 cut(s)	39, 183, 617, 741
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	531
TseI	GCWGC	2 cut(s)	448, 674
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	3 cut(s)	326, 402, 524
TspGWI	ACGGA	2 cut(s)	45, 72
TspRI	CASTG	1 cut(s)	322
Vha464I	CTTAAG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	50
XceI	RCATGY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.