RLG00000033029
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001787
Physical Location & Seq
Forward (+)
22372975 .. 22374492
1518 bp
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UTR
Exon/CDS
Intron
RLM00000033029

Sequence Viewer

Length: 561 bp
ATGAACAGGGTTGAATTAGGTGAAGGAAGCTCTCTTAGGGGAGTTGACAATGGTCAACAATTACAATTACAATACACACCACATTTCTCATCCTATGAGAATCGTGAAACTAGTAATGAACGTCAACAGATGCGAGTCTACCGTGCGAATTTGCCAGCGGAAAGGATGATCCAGCCGAGACCTACCGGCCCTTTAACTGCTCTGTTTAAACCATATGTTTACTCCAACAGAGTTCCTCGGATTTCCTGGACACCTGATCTCCACCGCTGTTTTGTGCATGCAGTTGATAGCCTTGGAGGAGAAGATAGAGCTACTCCAAAGCAGATCTTGCAGATCATGAATGTTGAAGGTGTCACCATGAATCATATAAAAAGCCATCTTCAGATGTATAGGAGCATGAAACATGAAGAACGCATCCAAGAAGCAGCTGCAAAAGCAAACGAGAATGTGAGAGTGCAATCACCTGAATCCGTCGATAGCTCCTCCACTCCACCCTGGATAGATGAGAAGAAAACGAAACCTTACCTCATCTTCAGATCTATTTTCGGGATTAACCAATAA

Protein Analysis

187

Amino Acids

21.45

Weight (kDa)

9.26

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 82 - 131 4.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AciI CCGC 2 cut(s) 158, 265
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 2 cut(s) 365, 517
AgsI TTSAA 2 cut(s) 14, 347
AhlI ACTAGT 1 cut(s) 110
AjnI CCWGG 2 cut(s) 245, 494
AluBI AGCT 4 cut(s) 30, 311, 428, 480
AluI AGCT 4 cut(s) 30, 311, 428, 480
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 163
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 425, 428
ApoI RAATTY 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 3 cut(s) 32, 346, 453
BbvI GCAGC 2 cut(s) 415, 437
BccI CCATC 1 cut(s) 384
BciT130I CCWGG 2 cut(s) 247, 496
BcoDI GTCTC 1 cut(s) 172
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 1 cut(s) 111
BglII AGATCT 2 cut(s) 324, 536
BisI GCNGC 2 cut(s) 426, 429
BlsI GCNGC 2 cut(s) 427, 430
Bme1390I CCNGG 2 cut(s) 247, 496
BmgT120I GGNCC 1 cut(s) 188
BmrFI CCNGG 2 cut(s) 247, 496
BmsI GCATC 2 cut(s) 120, 423
BoxI GACNNNNGTC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 3 cut(s) 236, 292, 494
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bse118I RCCGGY 1 cut(s) 185
BseBI CCWGG 2 cut(s) 247, 496
BseDI CCNNGG 3 cut(s) 236, 292, 494
BseGI GGATG 3 cut(s) 89, 171, 414
BseRI GAGGAG 2 cut(s) 312, 472
BseXI GCAGC 2 cut(s) 415, 437
BshFI GGCC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 172
Bsp143I GATC 5 cut(s) 168, 256, 324, 333, 536
BspACI CCGC 2 cut(s) 158, 265
BspANI GGCC 1 cut(s) 189
BspHI TCATGA 1 cut(s) 336
BspPI GGATC 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 3 cut(s) 236, 292, 494
BssMI GATC 5 cut(s) 168, 256, 324, 333, 536
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 247, 496
Bst4CI ACNGT 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 156, 279
BstDEI CTNAG 1 cut(s) 35
BstF5I GGATG 3 cut(s) 89, 171, 414
BstKTI GATC 5 cut(s) 171, 259, 327, 336, 539
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 5 cut(s) 168, 256, 324, 333, 536
BstMWI GCNNNNNNNGC 2 cut(s) 328, 434
BstNI CCWGG 2 cut(s) 247, 496
BstNSI RCATGY 1 cut(s) 281
BstPAI GACNNNNGTC 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 245, 494
BstV1I GCAGC 2 cut(s) 415, 437
BstX2I RGATCY 2 cut(s) 324, 536
BstYI RGATCY 2 cut(s) 324, 536
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 3 cut(s) 89, 171, 414
Cac8I GCNNGC 2 cut(s) 156, 279
CciI TCATGA 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 5 cut(s) 278, 337, 358, 397, 404
CviJI RGCY 8 cut(s) 30, 175, 189, 291, 311, 375, 428, 480
CviKI_1 RGCY 8 cut(s) 30, 175, 189, 291, 311, 375, 428, 480
DdeI CTNAG 1 cut(s) 35
DpnI GATC 5 cut(s) 170, 258, 326, 335, 538
DpnII GATC 5 cut(s) 168, 256, 324, 333, 536
DraI TTTAAA 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 172
Eco57I CTGAAG 2 cut(s) 365, 517
EcoRII CCWGG 2 cut(s) 245, 494
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 5 cut(s) 281, 340, 361, 400, 407
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 5 cut(s) 277, 336, 357, 396, 403
FauNDI CATATG 1 cut(s) 214
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 426, 429
FokI GGATG 3 cut(s) 76, 178, 401
Fsp4HI GCNGC 2 cut(s) 426, 429
FspBI CTAG 1 cut(s) 111
GluI GCNGC 2 cut(s) 426, 429
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 186
Hin1II CATG 5 cut(s) 281, 340, 361, 400, 407
HincII GTYRAC 3 cut(s) 46, 56, 125
HindII GTYRAC 3 cut(s) 46, 56, 125
HinfI GANTC 4 cut(s) 100, 135, 361, 467
HpaII CCGG 1 cut(s) 186
HphI GGTGA 3 cut(s) 32, 346, 453
Hpy166II GTNNAC 5 cut(s) 46, 56, 125, 139, 220
Hpy188I TCNGA 3 cut(s) 240, 384, 536
Hpy188III TCNNGA 3 cut(s) 104, 337, 547
Hpy8I GTNNAC 5 cut(s) 46, 56, 125, 139, 220
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 2 cut(s) 17, 341
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 5 cut(s) 277, 281, 331, 431, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 328, 434
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 5 cut(s) 281, 340, 361, 400, 407
Kzo9I GATC 5 cut(s) 168, 256, 324, 333, 536
LmnI GCTCC 2 cut(s) 393, 485
LpnPI CCDG 9 cut(s) 168, 185, 199, 232, 259, 267, 477, 481, 508
Lsp1109I GCAGC 2 cut(s) 415, 437
LweI GCATC 2 cut(s) 120, 423
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 352
MalI GATC 5 cut(s) 170, 258, 326, 335, 538
MboI GATC 5 cut(s) 168, 256, 324, 333, 536
MboII GAAGA 5 cut(s) 314, 371, 419, 520, 523
MflI RGATCY 2 cut(s) 324, 536
MluCI AATT 4 cut(s) 14, 59, 65, 148
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 4 cut(s) 246, 290, 493, 536
MseI TTAA 3 cut(s) 194, 207, 552
MspA1I CMGCKG 3 cut(s) 158, 267, 428
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 247, 496
MssI GTTTAAAC 1 cut(s) 208
MvaI CCWGG 2 cut(s) 247, 496
MwoI GCNNNNNNNGC 2 cut(s) 328, 434
NdeI CATATG 1 cut(s) 214
NdeII GATC 5 cut(s) 168, 256, 324, 333, 536
NlaIII CATG 5 cut(s) 281, 340, 361, 400, 407
NmeAIII GCCGAG 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 281
PaeI GCATGC 1 cut(s) 281
PagI TCATGA 1 cut(s) 336
PfeI GAWTC 3 cut(s) 100, 361, 467
PfoI TCCNGGA 1 cut(s) 245
PkrI GCNGC 2 cut(s) 427, 430
PleI GAGTC 1 cut(s) 143
PmeI GTTTAAAC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 143
PshAI GACNNNNGTC 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 245, 494
PspGI CCWGG 2 cut(s) 245, 494
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 2 cut(s) 324, 536
PvuII CAGCTG 1 cut(s) 428
SaqAI TTAA 3 cut(s) 194, 207, 552
SatI GCNGC 2 cut(s) 426, 429
Sau3AI GATC 5 cut(s) 168, 256, 324, 333, 536
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 2 cut(s) 247, 496
SfaNI GCATC 2 cut(s) 120, 423
SpeI ACTAGT 1 cut(s) 110
SphI GCATGC 1 cut(s) 281
Sse9I AATT 4 cut(s) 14, 59, 65, 148
SsiI CCGC 2 cut(s) 158, 265
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 245, 494
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 474
TasI AATT 4 cut(s) 14, 59, 65, 148
TfiI GAWTC 3 cut(s) 100, 361, 467
Tru1I TTAA 3 cut(s) 194, 207, 552
Tru9I TTAA 3 cut(s) 194, 207, 552
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 425, 428
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 6 cut(s) 17, 132, 353, 374, 413, 420
TspGWI ACGGA 1 cut(s) 460
XapI RAATTY 1 cut(s) 148
XceI RCATGY 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.