RLG00000033030
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001787
Physical Location & Seq
Forward (+)
22382964 .. 22384878
1915 bp
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UTR
Exon/CDS
Intron
RLM00000033030

Sequence Viewer

Length: 522 bp
ATGATCATGCCGAGACCTACCGGCCAGTTAGCTGCTATGGTTAGACCTTATGTTCGCTCTAAAGCGCCTCGGATTCACTGGACACCTGATCTCCACCGCTGTTTTGTGCATGCAGTTGATATCCTTGGAGGAGAAGACAGAGCTACTCCAAAGAAGATCTTGCGAATCATGAATGTTAAAGGTCTCACCATGAATCATATAAAAAGCCATCTTCAGGATTTACCTTTGAGAATGTATAACAATATATCCGCAATTTCTTCTGACTTTGCTAGCTGGGTACGTGACTTTTGCAGGAAAGATGAGAAGAAAACGAAATCTTACCTCATCTTTACAGATCTATTTCAGGGATTAACCAATAATACTCAAGAAAGCAATGATGATGAAGGGACTGATGCTAATATTAGAGGAGCTATTGATGCCACAATGCCTCAGACACTAAACTCATCATCAAATGCTGGGAGTAGTTCTAATGTAAATGATGTCTCCCTTGAACTCACTCTGGTTTATCATGCACATATGTAA

Protein Analysis

174

Amino Acids

19.46

Weight (kDa)

8.59

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 26 - 73 6.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 97, 249
AcoI YGGCCR 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 491
AluBI AGCT 4 cut(s) 32, 143, 273, 410
AluI AGCT 4 cut(s) 32, 143, 273, 410
Alw26I GTCTC 3 cut(s) 7, 188, 487
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 32
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AspLEI GCGC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 178
AsuNHI GCTAGC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 216
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 7, 188, 487
BfaI CTAG 1 cut(s) 270
BfoI RGCGCY 1 cut(s) 68
BglII AGATCT 2 cut(s) 156, 334
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmsI GCATC 2 cut(s) 382, 406
BmtI GCTAGC 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 348
BsaAI YACGTR 1 cut(s) 281
BsaI GGTCTC 2 cut(s) 7, 188
BsaJI CCNNGG 2 cut(s) 68, 124
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 25, 83
Bse3DI GCAATG 1 cut(s) 379
BseDI CCNNGG 2 cut(s) 68, 124
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 2 cut(s) 25, 83
BseRI GAGGAG 2 cut(s) 144, 420
BseXI GCAGC 1 cut(s) 19
BseYI CCCAGC 2 cut(s) 273, 455
BshFI GGCC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 3 cut(s) 7, 188, 487
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 1 cut(s) 24
Bso31I GGTCTC 2 cut(s) 7, 188
Bsp143I GATC 4 cut(s) 3, 88, 156, 334
BspACI CCGC 2 cut(s) 97, 249
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 442
BspHI TCATGA 1 cut(s) 168
BspOI GCTAGC 1 cut(s) 273
BspTNI GGTCTC 2 cut(s) 7, 188
BsrDI GCAATG 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 2 cut(s) 25, 83
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 68, 124
BssMI GATC 4 cut(s) 3, 88, 156, 334
BssT1I CCWWGG 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 111, 271
BstDEI CTNAG 1 cut(s) 429
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 4 cut(s) 6, 91, 159, 337
BstMAI GTCTC 3 cut(s) 7, 188, 487
BstMBI GATC 4 cut(s) 3, 88, 156, 334
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 2 cut(s) 156, 334
BstYI RGATCY 2 cut(s) 156, 334
BsuRI GGCC 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 111, 271
CciI TCATGA 1 cut(s) 168
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 20
Csp6I GTAC 1 cut(s) 278
CviAII CATG 5 cut(s) 7, 110, 169, 190, 509
CviJI RGCY 6 cut(s) 24, 32, 143, 207, 273, 410
CviKI_1 RGCY 6 cut(s) 24, 32, 143, 207, 273, 410
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 429
DpnI GATC 4 cut(s) 5, 90, 158, 336
DpnII GATC 4 cut(s) 3, 88, 156, 334
EaeI YGGCCR 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 124
Eco31I GGTCTC 2 cut(s) 7, 188
Eco32I GATATC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 197
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 5 cut(s) 10, 113, 172, 193, 512
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 400
FatI CATG 5 cut(s) 6, 109, 168, 189, 508
FauNDI CATATG 1 cut(s) 516
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 1 cut(s) 270
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 33
GsaI CCCAGC 2 cut(s) 277, 459
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 1 cut(s) 24
HapII CCGG 1 cut(s) 21
HhaI GCGC 1 cut(s) 67
Hin1II CATG 5 cut(s) 10, 113, 172, 193, 512
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 3 cut(s) 73, 165, 193
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 72, 262, 432
Hpy188III TCNNGA 3 cut(s) 169, 215, 365
HpyAV CCTTC 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 4 cut(s) 109, 113, 291, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 5 cut(s) 10, 113, 172, 193, 512
HspAI GCGC 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 88, 156, 334
LmnI GCTCC 1 cut(s) 407
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 2 cut(s) 382, 406
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 281
MalI GATC 4 cut(s) 5, 90, 158, 336
MboI GATC 4 cut(s) 3, 88, 156, 334
MboII GAAGA 5 cut(s) 146, 166, 203, 249, 316
MflI RGATCY 2 cut(s) 156, 334
MluCI AATT 1 cut(s) 252
MnlI CCTC 5 cut(s) 78, 122, 332, 398, 438
MseI TTAA 2 cut(s) 177, 350
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeI CATATG 1 cut(s) 516
NdeII GATC 4 cut(s) 3, 88, 156, 334
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 5 cut(s) 10, 113, 172, 193, 512
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 1 cut(s) 113
PaeI GCATGC 1 cut(s) 113
PagI TCATGA 1 cut(s) 168
PfeI GAWTC 3 cut(s) 73, 165, 193
PkrI GCNGC 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 281
PspFI CCCAGC 2 cut(s) 273, 455
PsuI RGATCY 2 cut(s) 156, 334
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 177, 350
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 4 cut(s) 3, 88, 156, 334
SfaNI GCATC 2 cut(s) 382, 406
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
SphI GCATGC 1 cut(s) 113
Sse9I AATT 1 cut(s) 252
SsiI CCGC 2 cut(s) 97, 249
SspI AATATT 1 cut(s) 400
SspMI CTAG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 124
TaiI ACGT 1 cut(s) 283
TasI AATT 1 cut(s) 252
TfiI GAWTC 3 cut(s) 73, 165, 193
Tru1I TTAA 2 cut(s) 177, 350
Tru9I TTAA 2 cut(s) 177, 350
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 185, 206, 396
TspRI CASTG 1 cut(s) 83
XceI RCATGY 1 cut(s) 113
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.