Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Reverse (-)

2293704 .. 2294906

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCAAGATCCGATGGTTAGATCTTACATTAGGTCAGACAATCCGCGAATGCACTGGACCGACGATCTTGATATCCGTTTTATTCAAGTTATTGAAAAACTCGGTGGCGAAGAGAGTGCAACTCCTAAGAGAATTTTGAGTCTTATGGGTGTGAGAGACCTCACAATATCACATGTCAAAAGTCATCTCCAGATGTATAGGAACAAAAAGAAAGAAGAATCTAGTAAAGAAATAAAAATGATGCGGGAGATGACACAGAGGCAATCTCAGCAATATCTTCAAATCTATGAACGTGCTACCCAATTTATCCAAAATCAACAAAGGCTACAACTGGATAATACTGAGAAGATAACCCCAGTTTTGGGATCAAGTAACAAGTCTCTAGATCAATCTTCAAAGGTTGGACTAAATGAAAACAGAGGCAATGATGTTGTTGTTGTTGGTGGTGCAACTGGTGAAGAAGAATTGTCCCTTGAACTCACTCTTGGTCGCAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

166

Amino Acids

19.22

Weight (kDa)

8.8

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 67	2.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	46
AciI	CCGC	2 cut(s)	44, 244
AclWI	GGATC	2 cut(s)	2, 373
AcsI	RAATTY	1 cut(s)	132
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	2 cut(s)	361, 362
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	5 cut(s)	86, 95, 281, 396, 476
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
Alw26I	GTCTC	2 cut(s)	150, 384
AlwI	GGATC	2 cut(s)	2, 373
ApoI	RAATTY	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	57
BccI	CCATC	1 cut(s)	7
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BcoDI	GTCTC	2 cut(s)	150, 384
BfaI	CTAG	2 cut(s)	222, 383
BglII	AGATCT	1 cut(s)	20
BmcAI	AGTACT	1 cut(s)	497
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	350
BplI	GAGNNNNNCTC	4 cut(s)	106, 138, 250, 282
BpmI	CTGGAG	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 362
Bse1I	ACTGG	4 cut(s)	59, 336, 356, 457
Bse3DI	GCAATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	2 cut(s)	361, 362
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	2 cut(s)	281, 333
BseNI	ACTGG	4 cut(s)	59, 336, 356, 457
Bsh1236I	CGCG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	361, 362
BsmAI	GTCTC	2 cut(s)	150, 384
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	54
Bso31I	GGTCTC	1 cut(s)	150
Bsp143I	GATC	5 cut(s)	7, 20, 64, 365, 385
BspACI	CCGC	2 cut(s)	44, 244
BspCNI	CTCAG	2 cut(s)	280, 334
BspFNI	CGCG	1 cut(s)	46
BspPI	GGATC	2 cut(s)	2, 373
BspTNI	GGTCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	430
BsrI	ACTGG	4 cut(s)	59, 336, 356, 457
BssMI	GATC	5 cut(s)	7, 20, 64, 365, 385
Bst6I	CTCTTC	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	126, 267, 342
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	5 cut(s)	10, 23, 67, 368, 388
BstMAI	GTCTC	2 cut(s)	150, 384
BstMBI	GATC	5 cut(s)	7, 20, 64, 365, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	176
BstUI	CGCG	1 cut(s)	46
BstX2I	RGATCY	2 cut(s)	7, 20
BstYI	RGATCY	2 cut(s)	7, 20
BtsIMutI	CAGTG	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	1 cut(s)	325
CviKI_1	RGCY	1 cut(s)	325
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	3 cut(s)	126, 267, 342
DpnI	GATC	5 cut(s)	9, 22, 66, 367, 387
DpnII	GATC	5 cut(s)	7, 20, 64, 365, 385
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	150
Eco32I	GATATC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	57
EcoRV	GATATC	1 cut(s)	73
FaeI	CATG	1 cut(s)	176
FaiI	YATR	4 cut(s)	146, 174, 198, 288
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	1 cut(s)	172
FauI	CCCGC	1 cut(s)	237
FspBI	CTAG	2 cut(s)	222, 383
GsuI	CTGGAG	1 cut(s)	173
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	2 cut(s)	139, 218
HphI	GGTGA	1 cut(s)	467
Hpy188I	TCNGA	2 cut(s)	12, 37
Hpy188III	TCNNGA	3 cut(s)	68, 190, 383
Hpy99I	CGWCG	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	4 cut(s)	4, 52, 119, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	3 cut(s)	126, 267, 342
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	176
Kzo9I	GATC	5 cut(s)	7, 20, 64, 365, 385
LpnPI	CCDG	5 cut(s)	40, 203, 317, 369, 438
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	222, 383
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	5 cut(s)	9, 22, 66, 367, 387
MboI	GATC	5 cut(s)	7, 20, 64, 365, 385
MboII	GAAGA	7 cut(s)	122, 227, 269, 358, 384, 470, 473
MflI	RGATCY	2 cut(s)	7, 20
MluCI	AATT	3 cut(s)	132, 302, 464
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	3 cut(s)	170, 252, 413
Mva1269I	GAATGC	1 cut(s)	54
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	5 cut(s)	7, 20, 64, 365, 385
NlaIII	CATG	1 cut(s)	176
NspI	RCATGY	1 cut(s)	176
PciI	ACATGT	1 cut(s)	172
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PscI	ACATGT	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	2 cut(s)	7, 20
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
Sau3AI	GATC	5 cut(s)	7, 20, 64, 365, 385
Sau96I	GGNCC	1 cut(s)	57
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	1 cut(s)	148
SetI	ASST	4 cut(s)	35, 162, 295, 402
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	3 cut(s)	132, 302, 464
SsiI	CCGC	2 cut(s)	44, 244
SspMI	CTAG	2 cut(s)	222, 383
TaiI	ACGT	1 cut(s)	295
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	3 cut(s)	132, 302, 464
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	303, 426
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	132
XbaI	TCTAGA	1 cut(s)	382
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	2 cut(s)	222, 383
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.