AT1G67780

subgroup (InterPro IPR018500), Cell division cycle-associated protein (InterPro IPR018866)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000989
Physical Location & Seq
Forward (+)
25412666 .. 25415797
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67780.2

Sequence Viewer

Length: 1539 bp
ATGGCTATTGAGGGTGAGAAAGAGAAACCATCGAAGCGTACCACTAATCCCGGCGTTAGAGTCGTCGGAGGAAGAATCTACGATTCCAGTAATGGCAAAACCTGTCACCAGTGTCGACAGAAGACTATGGACTTCGTTGCGTCTTGCAAGGCTATGAAGAAGGATAAGCAATGTACCATTAATTTTTGTCATAAGTGTTTAATAAACAGGTATGGTGAGAATGCAGAAGAAGTAGCGAAGTTAGATGATTGGATATGTCCTCAGTGTAGAGGCATCTGCAATTGCAGTTTTTGCAGGAAGAAACGAGGACTAAATCCCACCGGGATATTGGCACACAAAGCTAAAGCTAGTGGATTAGCTTCAGTATCTATGCTTCTTGAAGTTGAGGGGCATGATAACTTTGCTTATCAGAAGAAGCCAAAACTGAATGATGATTCTATGGAAGGTAGTAGTGGCAATAGTGATTCTGTTTCGGGGACAGATGTTGAAGTAGCTGATGTTGCCAAGGATAAGAAAAAAGTGGTGGGCAAGAGCAAGAAAGCCAATGCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTCCTCAGGGTATAAGCTTGATTTCTGTGTCAGGCGTTGTTATACCAACTGAAGAAGCTGGAAATGTATTCCAGCTTTTCGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGAGTTGAAGGAAGGACAAGCTGAAACTGTTGTCCGTGAGCTCTTCTCATGTGGGCGTAACACAAGGAGACAACAATACTGCTCTATTATCCAGCTGATGATCCAATTGTTGGATTTAATATCAAAGGATAGAGAGATGTCCTTGTCTCTAAGTGTGTCTGACAATTGGTTCACTGCTCTTGGAGAGATCCTATTGCAGTCAGAAGTTTTGAGTGATGAGTTCCCACCTGAAACTTTTGAAACAGGTGTTGCTGAGTATGAGAAGATGGATGCATCAAGAAGGCTCAAGCTTCTCAACTTCGTATGTGATGAATCACTTAGCACTTGGGCAATGAGGAATTGCATTAAGAGCCAGAGTACAGAGTGTAAAGCAAATAACAACGAAGCTAAAAGAAAGGCTGCAGCTGCAAAGGAAAAGGAGAAGCAGCTTAAACAGAAGTTGCAAGGTGATCTTGCCAAAGCCATTATGAAGAAAAACGGAGCTCCATTGTCCATTGAGGAACACAATGAAATTCTGTCTCAAATAAGAGCTGAAGCTAAAGAAGCTCATGATGGAATGATGGAGGCAAAGGGCATAACATCTGGAATGACGCGTATATGTGATGCGCGTAGAACTGAACCAATCATGGTGGAAGATAATGGTCTTGTTCTCTGGAAATTGAACTGCTATGATGAAGAACCAAAGTTTTTGCTCCAAGATCTAGGAACATTTGATGGTTTATGTTCACATGAAAAATGGTTAGCTTTTAAGCCTGAGCAGAAACCAGATATAGAGAACTATATCTCTTACAAGAGGAGGAAGGTGATGCAAACATTGAAGAACACAAATGTGGTAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WHIM1 zf-4CXXC_R1

Protein Analysis

512

Amino Acids

57.26

Weight (kDa)

8.25

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 27 - 126 5.6e-38 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 808
AccI GTMKAC 1 cut(s) 115
AccII CGCG 2 cut(s) 1291, 1306
AclWI GGATC 2 cut(s) 793, 880
AcsI RAATTY 1 cut(s) 1209
AcuI CTGAAG 3 cut(s) 345, 660, 1251
AfaI GTAC 3 cut(s) 40, 175, 1057
AfiI CCNNNNNNNGG 1 cut(s) 808
AflIII ACRYGT 1 cut(s) 1289
AgsI TTSAA 6 cut(s) 380, 488, 706, 938, 1360, 1516
AleI CACNNNNGTG 1 cut(s) 1526
Alw21I GWGCWC 2 cut(s) 741, 1183
Alw26I GTCTC 3 cut(s) 760, 849, 1221
AlwI GGATC 2 cut(s) 793, 880
ApeKI GCWGC 4 cut(s) 1097, 1100, 1103, 1123
ApoI RAATTY 1 cut(s) 1209
AseI ATTAAT 1 cut(s) 180
AspLEI GCGC 1 cut(s) 1306
AsuC2I CCSGG 2 cut(s) 51, 322
AsuHPI GGTGA 5 cut(s) 26, 98, 227, 1157, 1513
AxyI CCTNAGG 1 cut(s) 594
BanII GRGCYC 2 cut(s) 741, 1183
BarI GAAGNNNNNNTAC 2 cut(s) 357, 389
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 2 cut(s) 741, 1183
BbvI GCAGC 4 cut(s) 1084, 1090, 1112, 1135
BccI CCATC 5 cut(s) 37, 958, 1244, 1252, 1406
BcnI CCSGG 2 cut(s) 51, 322
BcoDI GTCTC 3 cut(s) 760, 849, 1221
BfaI CTAG 2 cut(s) 348, 1400
BfmI CTRYAG 1 cut(s) 1098
BglII AGATCT 1 cut(s) 1396
BisI GCNGC 4 cut(s) 1098, 1101, 1104, 1124
BlpI GCTNAGC 1 cut(s) 679
BlsI GCNGC 4 cut(s) 1099, 1102, 1105, 1125
Bme1390I CCNGG 2 cut(s) 51, 322
BmrFI CCNGG 2 cut(s) 51, 322
BmsI GCATC 5 cut(s) 282, 958, 980, 1291, 1494
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 4 cut(s) 662, 694, 728, 760
Bpu10I CCTNAGC 1 cut(s) 1452
Bpu1102I GCTNAGC 1 cut(s) 679
BpuEI CTTGAG 2 cut(s) 719, 968
BpuMI CCSGG 2 cut(s) 51, 322
BsaJI CCNNGG 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 560, 590
Bsc4I CCNNNNNNNGG 1 cut(s) 808
Bse1I ACTGG 2 cut(s) 87, 109
Bse21I CCTNAGG 1 cut(s) 594
Bse3DI GCAATG 2 cut(s) 176, 1035
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 973
BseLI CCNNNNNNNGG 1 cut(s) 808
BseMI GCAATG 2 cut(s) 176, 1035
BseMII CTCAG 5 cut(s) 275, 608, 693, 942, 1443
BseNI ACTGG 2 cut(s) 87, 109
BseRI GAGGAG 2 cut(s) 581, 1507
BseXI GCAGC 4 cut(s) 1084, 1090, 1112, 1135
Bsh1236I CGCG 2 cut(s) 1291, 1306
BsiHKAI GWGCWC 2 cut(s) 741, 1183
BsiSI CCGG 2 cut(s) 51, 321
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 1 cut(s) 808
BsmAI GTCTC 3 cut(s) 760, 849, 1221
BsmFI GGGAC 1 cut(s) 490
BsmI GAATGC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 741, 1183
Bsp143I GATC 4 cut(s) 798, 885, 1147, 1396
Bsp1720I GCTNAGC 1 cut(s) 679
BspCNI CTCAG 5 cut(s) 274, 607, 692, 943, 1444
BspFNI CGCG 2 cut(s) 1291, 1306
BspHI TCATGA 1 cut(s) 1246
BspMAI CTGCAG 1 cut(s) 1102
BspPI GGATC 2 cut(s) 793, 880
BspQI GCTCTTC 1 cut(s) 746
BsrDI GCAATG 2 cut(s) 176, 1035
BsrI ACTGG 2 cut(s) 87, 109
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 4 cut(s) 798, 885, 1147, 1396
BssT1I CCWWGG 1 cut(s) 504
Bst4CI ACNGT 1 cut(s) 727
Bst6I CTCTTC 1 cut(s) 746
BstAPI GCANNNNNTGC 1 cut(s) 291
BstDEI CTNAG 7 cut(s) 261, 594, 679, 848, 951, 1016, 1452
BstF5I GGATG 1 cut(s) 973
BstFNI CGCG 2 cut(s) 1291, 1306
BstHHI GCGC 1 cut(s) 1306
BstKTI GATC 4 cut(s) 801, 888, 1150, 1399
BstMAI GTCTC 3 cut(s) 760, 849, 1221
BstMBI GATC 4 cut(s) 798, 885, 1147, 1396
BstMWI GCNNNNNNNGC 6 cut(s) 291, 338, 500, 1047, 1103, 1241
BstSCI CCNGG 2 cut(s) 49, 320
BstSFI CTRYAG 1 cut(s) 1098
BstUI CGCG 2 cut(s) 1291, 1306
BstV1I GCAGC 4 cut(s) 1084, 1090, 1112, 1135
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 2 cut(s) 885, 1396
BstYI RGATCY 2 cut(s) 885, 1396
Bsu36I CCTNAGG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 973
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 3 cut(s) 116, 269, 870
CciI TCATGA 1 cut(s) 1246
CfoI GCGC 1 cut(s) 1306
CseI GACGC 2 cut(s) 129, 1297
Csp6I GTAC 3 cut(s) 39, 174, 1056
CspCI CAANNNNNGTGG 2 cut(s) 1308, 1343
CviAII CATG 5 cut(s) 392, 747, 1247, 1324, 1427
CviQI GTAC 3 cut(s) 39, 174, 1056
DdeI CTNAG 7 cut(s) 261, 594, 679, 848, 951, 1016, 1452
DpnI GATC 4 cut(s) 800, 887, 1149, 1398
DpnII GATC 4 cut(s) 798, 885, 1147, 1396
Eam1104I CTCTTC 1 cut(s) 746
EarI CTCTTC 1 cut(s) 746
Ecl136II GAGCTC 2 cut(s) 739, 1181
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 2 cut(s) 741, 1183
Eco53kI GAGCTC 2 cut(s) 739, 1181
Eco57I CTGAAG 3 cut(s) 345, 660, 1251
Eco81I CCTNAGG 1 cut(s) 594
EcoICRI GAGCTC 2 cut(s) 739, 1181
EcoT14I CCWWGG 1 cut(s) 504
EcoT22I ATGCAT 1 cut(s) 973
EcoT38I GRGCYC 2 cut(s) 741, 1183
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 5 cut(s) 395, 750, 1250, 1327, 1430
FalI AAGNNNNNCTT 2 cut(s) 1134, 1166
FaqI GGGAC 1 cut(s) 490
FatI CATG 5 cut(s) 391, 746, 1246, 1323, 1426
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 4 cut(s) 1098, 1101, 1104, 1124
FokI GGATG 1 cut(s) 980
FriOI GRGCYC 2 cut(s) 741, 1183
Fsp4HI GCNGC 4 cut(s) 1098, 1101, 1104, 1124
FspBI CTAG 2 cut(s) 348, 1400
GlaI GCGC 1 cut(s) 1305
GluI GCNGC 4 cut(s) 1098, 1101, 1104, 1124
HapII CCGG 2 cut(s) 51, 321
HgaI GACGC 2 cut(s) 129, 1297
HhaI GCGC 1 cut(s) 1306
Hin1II CATG 5 cut(s) 395, 750, 1250, 1327, 1430
Hin6I GCGC 1 cut(s) 1304
HinP1I GCGC 1 cut(s) 1304
HincII GTYRAC 1 cut(s) 116
HindII GTYRAC 1 cut(s) 116
HindIII AAGCTT 2 cut(s) 604, 986
HinfI GANTC 7 cut(s) 60, 75, 83, 434, 464, 571, 1010
HpaII CCGG 2 cut(s) 51, 321
HphI GGTGA 5 cut(s) 26, 98, 227, 1157, 1513
Hpy166II GTNNAC 3 cut(s) 116, 870, 1424
Hpy188I TCNGA 4 cut(s) 68, 411, 859, 901
Hpy188III TCNNGA 6 cut(s) 377, 698, 975, 1247, 1281, 1351
Hpy8I GTNNAC 3 cut(s) 116, 870, 1424
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 6 cut(s) 154, 437, 700, 704, 972, 1492
HpyCH4III ACNGT 1 cut(s) 727
HpyF10VI GCNNNNNNNGC 6 cut(s) 291, 338, 500, 1047, 1103, 1241
HpyF3I CTNAG 7 cut(s) 261, 594, 679, 848, 951, 1016, 1452
Hsp92II CATG 5 cut(s) 395, 750, 1250, 1327, 1430
HspAI GCGC 1 cut(s) 1304
Kzo9I GATC 4 cut(s) 798, 885, 1147, 1396
LguI GCTCTTC 1 cut(s) 746
LmnI GCTCC 3 cut(s) 1178, 1186, 1395
Lsp1109I GCAGC 4 cut(s) 1084, 1090, 1112, 1135
LweI GCATC 5 cut(s) 282, 958, 980, 1291, 1494
MaeI CTAG 2 cut(s) 348, 1400
MaeIII GTNAC 2 cut(s) 104, 755
MalI GATC 4 cut(s) 800, 887, 1149, 1398
MboI GATC 4 cut(s) 798, 885, 1147, 1396
MfeI CAATTG 3 cut(s) 280, 803, 862
MflI RGATCY 2 cut(s) 885, 1396
MhlI GDGCHC 2 cut(s) 741, 1183
MluCI AATT 7 cut(s) 181, 280, 803, 862, 1036, 1209, 1355
MluI ACGCGT 1 cut(s) 1289
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 2 cut(s) 46, 789
Mph1103I ATGCAT 1 cut(s) 973
MseI TTAA 6 cut(s) 180, 200, 815, 1044, 1128, 1446
MslI CAYNNNNRTG 1 cut(s) 1526
MspA1I CMGCKG 2 cut(s) 793, 1103
MspI CCGG 2 cut(s) 51, 321
MspR9I CCNGG 2 cut(s) 51, 322
MunI CAATTG 3 cut(s) 280, 803, 862
Mva1269I GAATGC 1 cut(s) 226
MvnI CGCG 2 cut(s) 1291, 1306
MwoI GCNNNNNNNGC 6 cut(s) 291, 338, 500, 1047, 1103, 1241
NciI CCSGG 2 cut(s) 51, 322
NdeII GATC 4 cut(s) 798, 885, 1147, 1396
NlaIII CATG 5 cut(s) 395, 750, 1250, 1327, 1430
NmuCI GTSAC 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 973
OliI CACNNNNGTG 1 cut(s) 1526
PagI TCATGA 1 cut(s) 1246
PciSI GCTCTTC 1 cut(s) 746
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 6 cut(s) 75, 83, 434, 464, 571, 1010
PflMI CCANNNNNTGG 1 cut(s) 808
PkrI GCNGC 4 cut(s) 1099, 1102, 1105, 1125
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PshBI ATTAAT 1 cut(s) 180
Psp124BI GAGCTC 2 cut(s) 741, 1183
PstI CTGCAG 1 cut(s) 1102
PsuI RGATCY 2 cut(s) 885, 1396
PvuII CAGCTG 2 cut(s) 793, 1103
RsaI GTAC 3 cut(s) 40, 175, 1057
RsaNI GTAC 3 cut(s) 39, 174, 1056
RseI CAYNNNNRTG 1 cut(s) 1526
SacI GAGCTC 2 cut(s) 741, 1183
SalI GTCGAC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 746
SaqAI TTAA 6 cut(s) 180, 200, 815, 1044, 1128, 1446
SatI GCNGC 4 cut(s) 1098, 1101, 1104, 1124
Sau3AI GATC 4 cut(s) 798, 885, 1147, 1396
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 51, 322
SduI GDGCHC 2 cut(s) 741, 1183
SfaNI GCATC 5 cut(s) 282, 958, 980, 1291, 1494
SfcI CTRYAG 1 cut(s) 1098
SmiMI CAYNNNNRTG 1 cut(s) 1526
SmlI CTYRAG 2 cut(s) 698, 983
SmoI CTYRAG 2 cut(s) 698, 983
Sse9I AATT 7 cut(s) 181, 280, 803, 862, 1036, 1209, 1355
SspMI CTAG 2 cut(s) 348, 1400
SstI GAGCTC 2 cut(s) 741, 1183
StyD4I CCNGG 2 cut(s) 49, 320
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 727
TaqI TCGA 3 cut(s) 32, 115, 669
TasI AATT 7 cut(s) 181, 280, 803, 862, 1036, 1209, 1355
TatI WGTACW 1 cut(s) 1055
TfiI GAWTC 6 cut(s) 75, 83, 434, 464, 571, 1010
Tru1I TTAA 6 cut(s) 180, 200, 815, 1044, 1128, 1446
Tru9I TTAA 6 cut(s) 180, 200, 815, 1044, 1128, 1446
TscAI CASTG 3 cut(s) 116, 269, 877
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 4 cut(s) 1097, 1100, 1103, 1123
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 6 cut(s) 170, 1023, 1181, 1221, 1386, 1443
TspGWI ACGGA 2 cut(s) 722, 1191
TspRI CASTG 3 cut(s) 116, 269, 877
Van91I CCANNNNNTGG 1 cut(s) 808
VspI ATTAAT 1 cut(s) 180
XapI RAATTY 1 cut(s) 1209
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 115
XspI CTAG 2 cut(s) 348, 1400
Zsp2I ATGCAT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.