Rorug07G0320500

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000989
Physical Location & Seq
Reverse (-)
32891709 .. 32892202
494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0320500.1

Sequence Viewer

Length: 414 bp
ATGGCAGACAATGAATTCATTAAACCATTGCTCTCTAATGATATTTCCATAGTGTTCCCGCAACCAATGTTCAACTATTTTGACTACAATGCTGAGCATCCTTCTGCTCAGACTGGTTCCGAGGATCAATGTGGAGAGAATGGCCCTTGGAGGGTGGTGTCTCGTAGGGGCAAGGGAAAAGGAAACTTCTACCCAAAGAGTGGTGGTTTTGTTGCTGGACCAAATTATGGAAATGTCAAAGGATCAAATGTGGTAATGCCTGGGGTCACCTTTAAAGATGTCACTCAAGGTAATGGCATTCTGAACTCAAAGAAGGTAACGGGGAATCAAAAGGAGTCTATTGCAACTGCTGGTAAGCAGAAGGAAGTGATTATGGTTTCTTCAGACTCTTCCCAAGAAGTTAAGCAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

137

Amino Acids

14.78

Weight (kDa)

8.66

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 200, 227
AciI CCGC 1 cut(s) 59
AclWI GGATC 2 cut(s) 132, 250
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 366
AfiI CCNNNNNNNGG 3 cut(s) 151, 200, 227
AgsI TTSAA 1 cut(s) 73
AjnI CCWGG 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 2 cut(s) 132, 250
AoxI GGCC 2 cut(s) 142, 408
ApoI RAATTY 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 143, 218
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 1 cut(s) 412
BlpI GCTNAGC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 143, 218
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 120, 146, 260
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 200, 227
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 3 cut(s) 120, 146, 260
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 3 cut(s) 151, 200, 227
BseMI GCAATG 1 cut(s) 26
BseMII CTCAG 2 cut(s) 84, 122
BseNI ACTGG 1 cut(s) 118
BshFI GGCC 2 cut(s) 144, 410
BslI CCNNNNNNNGG 3 cut(s) 151, 200, 227
BsmAI GTCTC 1 cut(s) 165
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 2 cut(s) 144, 410
Bsp143I GATC 2 cut(s) 124, 242
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 1 cut(s) 59
BspANI GGCC 2 cut(s) 144, 410
BspCNI CTCAG 2 cut(s) 85, 121
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 2 cut(s) 132, 250
BsrDI GCAATG 1 cut(s) 26
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 3 cut(s) 120, 146, 260
BssMI GATC 2 cut(s) 124, 242
BssT1I CCWWGG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 394
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 93, 108
BstEII GGTNACC 1 cut(s) 265
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 2 cut(s) 127, 245
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 2 cut(s) 124, 242
BstNI CCWGG 1 cut(s) 261
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 259
BsuRI GGCC 2 cut(s) 144, 410
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 408
Cfr13I GGNCC 2 cut(s) 143, 218
CviJI RGCY 2 cut(s) 144, 410
CviKI_1 RGCY 2 cut(s) 144, 410
DdeI CTNAG 2 cut(s) 93, 108
DpnI GATC 2 cut(s) 126, 244
DpnII GATC 2 cut(s) 124, 242
DraI TTTAAA 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 146
Eco147I AGGCCT 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 366
Eco91I GGTNACC 1 cut(s) 265
EcoO65I GGTNACC 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 146
FaiI YATR 3 cut(s) 50, 228, 374
FauI CCCGC 1 cut(s) 66
FokI GGATG 1 cut(s) 84
FspBI CTAG 1 cut(s) 412
HaeIII GGCC 2 cut(s) 144, 410
HinfI GANTC 3 cut(s) 325, 335, 386
HphI GGTGA 1 cut(s) 259
Hpy188I TCNGA 4 cut(s) 111, 121, 303, 385
HpyAV CCTTC 3 cut(s) 111, 307, 355
HpyCH4V TGCA 1 cut(s) 344
HpyF3I CTNAG 2 cut(s) 93, 108
Kzo9I GATC 2 cut(s) 124, 242
LpnPI CCDG 6 cut(s) 99, 201, 246, 273, 336, 392
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 412
MaeIII GTNAC 3 cut(s) 265, 280, 316
MalI GATC 2 cut(s) 126, 244
MboI GATC 2 cut(s) 124, 242
MboII GAAGA 2 cut(s) 372, 381
MluCI AATT 2 cut(s) 14, 223
MlyI GAGTC 2 cut(s) 344, 380
MnlI CCTC 2 cut(s) 115, 144
MseI TTAA 3 cut(s) 21, 273, 402
MspR9I CCNGG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 1 cut(s) 261
NdeII GATC 2 cut(s) 124, 242
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 2 cut(s) 265, 280
PceI AGGCCT 1 cut(s) 410
PctI GAATGC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 325
PflMI CCANNNNNTGG 2 cut(s) 200, 227
PleI GAGTC 2 cut(s) 343, 380
PpsI GAGTC 2 cut(s) 343, 380
Psp6I CCWGG 1 cut(s) 259
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 143, 218
SaqAI TTAA 3 cut(s) 21, 273, 402
Sau3AI GATC 2 cut(s) 124, 242
Sau96I GGNCC 2 cut(s) 143, 218
SchI GAGTC 2 cut(s) 344, 380
ScrFI CCNGG 1 cut(s) 261
SetI ASST 3 cut(s) 272, 292, 318
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 2 cut(s) 14, 223
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 412
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 1 cut(s) 146
TasI AATT 2 cut(s) 14, 223
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 3 cut(s) 21, 273, 402
Tru9I TTAA 3 cut(s) 21, 273, 402
TseFI GTSAC 2 cut(s) 265, 280
Tsp45I GTSAC 2 cut(s) 265, 280
TspDTI ATGAA 2 cut(s) 7, 27
Van91I CCANNNNNTGG 2 cut(s) 200, 227
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 14
XspI CTAG 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.