RchiOBHm_Chr7g0218691

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000989
Physical Location & Seq
Forward (+)
36829844 .. 36830639
796 bp
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UTR
Exon/CDS
Intron
PRQ19577

Sequence Viewer

Length: 378 bp
ATGCAGAGTTGCTTGAAGCAGAAATGTCGAAATCAAAATGTATGTACCATTTTCCAGTATCTTCAGTTCGTACTATTTGTAAGAACAGATGAAATGCCTTTTCGGCTTCCTCATCATGAATGTTTGGTTATCACTTTTGCTAATTGTTGTTACGTTACAGGGAAGCAACAGCCTGATTCTTTTAGAACAGAGCCTTATCTGTTCGACACTGATGGTCATGCCTATTGGAAATTGAAAGGCTATAATGATGGAGACAATGTGCTACTTCAAGATATGGGAACTGGGGATCCATTTGTATCTTCTGATGAACAATGGTTCTCGTATGGAGCAGAGACAAAAGAAGCAGCTGAGAATTACTACTCTTCTACAAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

125

Amino Acids

14.63

Weight (kDa)

5.04

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 281, 294
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 2 cut(s) 46, 72
AgsI TTSAA 3 cut(s) 16, 235, 269
AloI GAACNNNNNNTCC 2 cut(s) 271, 303
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw26I GTCTC 2 cut(s) 246, 326
AlwI GGATC 2 cut(s) 281, 294
ApeKI GCWGC 1 cut(s) 344
BamHI GGATCC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 356
BccI CCATC 2 cut(s) 206, 242
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BcoDI GTCTC 2 cut(s) 246, 326
BglI GCCNNNNNGGC 1 cut(s) 103
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 288
BmrI ACTGGG 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bse1I ACTGG 2 cut(s) 55, 286
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 55, 286
BseXI GCAGC 1 cut(s) 356
BsmAI GTCTC 2 cut(s) 246, 326
Bsp143I GATC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 340
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 2 cut(s) 281, 294
BsrI ACTGG 2 cut(s) 55, 286
BssMI GATC 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 348
BstKTI GATC 1 cut(s) 289
BstMAI GTCTC 2 cut(s) 246, 326
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 207
CciI TCATGA 1 cut(s) 115
Csp6I GTAC 2 cut(s) 45, 71
CviAII CATG 2 cut(s) 116, 218
CviJI RGCY 5 cut(s) 106, 172, 193, 240, 347
CviKI_1 RGCY 5 cut(s) 106, 172, 193, 240, 347
CviQI GTAC 2 cut(s) 45, 71
DdeI CTNAG 1 cut(s) 348
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 47
FaeI CATG 2 cut(s) 119, 221
FaiI YATR 6 cut(s) 43, 117, 219, 243, 275, 324
FatI CATG 2 cut(s) 115, 217
Fnu4HI GCNGC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 345
Hin1II CATG 2 cut(s) 119, 221
HinfI GANTC 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 2 cut(s) 116, 269
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 119, 221
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 4 cut(s) 68, 144, 186, 267
Lsp1109I GCAGC 1 cut(s) 356
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 149, 154
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 3 cut(s) 53, 291, 354
MflI RGATCY 1 cut(s) 286
MluCI AATT 3 cut(s) 142, 230, 352
MnlI CCTC 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 1 cut(s) 286
NlaIII CATG 2 cut(s) 119, 221
NlaIV GGNNCC 1 cut(s) 288
PagI TCATGA 1 cut(s) 115
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 288
PsrI GAACNNNNNNTAC 2 cut(s) 50, 82
PsuI RGATCY 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 2 cut(s) 46, 72
RsaNI GTAC 2 cut(s) 45, 71
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 1 cut(s) 286
SetI ASST 3 cut(s) 156, 349, 374
SgeI CNNG 9 cut(s) 25, 67, 128, 171, 185, 230, 281, 294, 331
Sse9I AATT 3 cut(s) 142, 230, 352
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 28, 204
TasI AATT 3 cut(s) 142, 230, 352
TfiI GAWTC 1 cut(s) 176
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 105, 132, 321
TspRI CASTG 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.