FvH4_4g11170

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000989
Physical Location & Seq
Reverse (-)
14973207 .. 14974100
894 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11170.t1

Sequence Viewer

Length: 336 bp
ATGGTGAGCAAGACGAAGCCAGTCACCATCCTCCGCCATGTTTACGATGTCGGCCACGGCTGCGTCAAAGGCTATGATGCTGGAAAGGATATGCTGCTTCAAATTTTACCTTTGTCAATATGTAGGAACTTGGATCCATTTACATCTTCTGATAAAGAGTGGTTCCTGTATCGAGAAGAAAAGAAAGAAGCAATAGAAAAGACTAGAAAGATTATGACTGAAAACATGTCTCAAACACTTCCTTCAAGTTCTGGAAGTAAGGATGAAGAGAAGCTTGAAAATGGGACTACTAGAAGTGAAGAAGAAGACATACCCAAAAGTAGTGCAAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

112

Amino Acids

12.6

Weight (kDa)

5.75

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 34
AclWI GGATC 2 cut(s) 128, 141
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 102
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 3 cut(s) 101, 246, 278
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 2 cut(s) 128, 141
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 2 cut(s) 60, 94
ApoI RAATTY 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 16, 16
BamHI GGATCC 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 294, 326
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 47, 81
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 2 cut(s) 204, 291
BisI GCNGC 2 cut(s) 61, 95
BlsI GCNGC 2 cut(s) 62, 96
BmiI GGNNCC 2 cut(s) 135, 164
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 2 cut(s) 27, 268
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 47, 81
BshFI GGCC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 34
BspANI GGCC 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 135, 164
BspPI GGATC 2 cut(s) 128, 141
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 2 cut(s) 27, 268
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 60, 69
BstNSI RCATGY 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 47, 81
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 2 cut(s) 27, 268
CseI GACGC 1 cut(s) 52
CviAII CATG 2 cut(s) 38, 226
CviJI RGCY 5 cut(s) 19, 54, 60, 72, 274
CviKI_1 RGCY 5 cut(s) 19, 54, 60, 72, 274
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EciI GGCGGA 1 cut(s) 23
FaeI CATG 2 cut(s) 41, 229
FaiI YATR 7 cut(s) 39, 75, 92, 121, 215, 227, 311
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 298
FatI CATG 2 cut(s) 37, 225
Fnu4HI GCNGC 2 cut(s) 61, 95
FokI GGATG 2 cut(s) 14, 275
Fsp4HI GCNGC 2 cut(s) 61, 95
FspBI CTAG 2 cut(s) 204, 291
GluI GCNGC 2 cut(s) 61, 95
HaeIII GGCC 1 cut(s) 54
HgaI GACGC 1 cut(s) 52
Hin1II CATG 2 cut(s) 41, 229
HindIII AAGCTT 1 cut(s) 272
HphI GGTGA 2 cut(s) 16, 16
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 173, 252
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 252
HpyCH4V TGCA 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 69
Hsp92II CATG 2 cut(s) 41, 229
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 33, 66, 179, 237
Lsp1109I GCAGC 2 cut(s) 47, 81
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 204, 291
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 6 cut(s) 138, 188, 278, 311, 314, 317
MflI RGATCY 1 cut(s) 133
MluCI AATT 1 cut(s) 102
MnlI CCTC 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 60, 69
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 41, 229
NlaIV GGNNCC 2 cut(s) 135, 164
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 1 cut(s) 229
PciI ACATGT 1 cut(s) 225
PkrI GCNGC 2 cut(s) 62, 96
PscI ACATGT 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 135, 164
PsuI RGATCY 1 cut(s) 133
SatI GCNGC 2 cut(s) 61, 95
Sau3AI GATC 1 cut(s) 133
SetI ASST 2 cut(s) 112, 276
SfaNI GCATC 1 cut(s) 67
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 34
SspMI CTAG 2 cut(s) 204, 291
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 102
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 2 cut(s) 60, 94
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 279
XapI RAATTY 1 cut(s) 102
XceI RCATGY 1 cut(s) 229
XspI CTAG 2 cut(s) 204, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.