Rmu_sc0001275.1_g000034

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001275.1
OG0000989
Physical Location & Seq
Reverse (-)
123988 .. 125501
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001275.1_g000034.1.cds

Sequence Viewer

Length: 573 bp
atgcatcaacgatactcctcaataatccgattccaggccaaactcctgtctgagatacagaagacgggggacgtaaaagagaactgccctcagatttctttagtagaggagttgaggggagacaatgctgcttcaatttcttcagatcacgaatctactgtttcgcgactgaagagtgaagcagctcaagatcatgcagagttgcttgaagcaaaagccttgaaatcaaagccttatctgttcgatgctgatggtcgtgcattttggagattgacaggctatagtgatggagatgatgtgctgcttcaagatgtaggaacttgggatccatttacatcttctgatgaaaaatgtatggggcagaaaagaaagaagcagttgaaaaatactgctcctgtaaggacaagaggccttatgtctgagactgaaaccctgtctcaaacacttccttcaagttctggaacacttttgttggctttctttttcaggacaagaggccttatgtctgagactgaaaccctgtctcaaacacttccttcaagttctggaagtaaggaaggagagagaagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

190

Amino Acids

21.09

Weight (kDa)

5.97

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 166
AclWI GGATC 2 cut(s) 320, 333
AcuI CTGAAG 2 cut(s) 126, 191
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 7 cut(s) 135, 209, 223, 308, 382, 453, 540
AjnI CCWGG 1 cut(s) 33
AloI GAACNNNNNNTCC 2 cut(s) 310, 342
AluBI AGCT 2 cut(s) 185, 570
AluI AGCT 2 cut(s) 185, 570
Alw26I GTCTC 5 cut(s) 114, 416, 441, 503, 528
AlwI GGATC 2 cut(s) 320, 333
AoxI GGCC 3 cut(s) 36, 409, 496
ApeKI GCWGC 3 cut(s) 128, 182, 301
BamHI GGATCC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 115, 194, 288
BccI CCATC 2 cut(s) 245, 281
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 5 cut(s) 114, 416, 441, 503, 528
BfmI CTRYAG 1 cut(s) 280
BisI GCNGC 3 cut(s) 129, 183, 302
BlsI GCNGC 3 cut(s) 130, 184, 303
Bme1390I CCNGG 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 2 cut(s) 13, 235
BpiI GAAGAC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 4 cut(s) 42, 104, 411, 498
BseRI GAGGAG 2 cut(s) 7, 122
BseXI GCAGC 3 cut(s) 115, 194, 288
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 38, 411, 498
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 5 cut(s) 114, 416, 441, 503, 528
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 3 cut(s) 38, 411, 498
Bsp143I GATC 3 cut(s) 145, 190, 325
Bsp68I TCGCGA 1 cut(s) 166
BspANI GGCC 3 cut(s) 38, 411, 498
BspCNI CTCAG 4 cut(s) 43, 103, 412, 499
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 2 cut(s) 320, 333
BssMI GATC 3 cut(s) 145, 190, 325
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 167
BstDEI CTNAG 4 cut(s) 51, 90, 420, 507
BstFNI CGCG 1 cut(s) 166
BstKTI GATC 3 cut(s) 148, 193, 328
BstMAI GTCTC 5 cut(s) 114, 416, 441, 503, 528
BstMBI GATC 3 cut(s) 145, 190, 325
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 280
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 3 cut(s) 115, 194, 288
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 3 cut(s) 38, 411, 498
BtuMI TCGCGA 1 cut(s) 166
CviAII CATG 1 cut(s) 194
CviJI RGCY 9 cut(s) 38, 185, 218, 232, 279, 411, 476, 498, 570
CviKI_1 RGCY 9 cut(s) 38, 185, 218, 232, 279, 411, 476, 498, 570
DdeI CTNAG 4 cut(s) 51, 90, 420, 507
DpnI GATC 3 cut(s) 147, 192, 327
DpnII GATC 3 cut(s) 145, 190, 325
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco147I AGGCCT 2 cut(s) 411, 498
Eco57I CTGAAG 2 cut(s) 126, 191
EcoRII CCWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 197
FaiI YATR 5 cut(s) 195, 282, 356, 416, 503
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 129, 183, 302
Fsp4HI GCNGC 3 cut(s) 129, 183, 302
GluI GCNGC 3 cut(s) 129, 183, 302
HaeIII GGCC 3 cut(s) 38, 411, 498
Hin1II CATG 1 cut(s) 197
HinfI GANTC 2 cut(s) 30, 152
Hpy188I TCNGA 7 cut(s) 29, 52, 93, 145, 343, 421, 508
Hpy188III TCNNGA 7 cut(s) 149, 165, 188, 308, 459, 487, 546
HpyAV CCTTC 3 cut(s) 459, 546, 551
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 4, 197, 260
HpyF3I CTNAG 4 cut(s) 51, 90, 420, 507
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 1 cut(s) 197
Kzo9I GATC 3 cut(s) 145, 190, 325
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 3 cut(s) 115, 194, 288
LweI GCATC 2 cut(s) 13, 235
MaeII ACGT 1 cut(s) 72
MalI GATC 3 cut(s) 147, 192, 327
MboI GATC 3 cut(s) 145, 190, 325
MboII GAAGA 4 cut(s) 73, 132, 184, 330
MflI RGATCY 1 cut(s) 325
MluCI AATT 1 cut(s) 135
MnlI CCTC 6 cut(s) 28, 99, 100, 108, 401, 488
Mph1103I ATGCAT 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 166
NdeII GATC 3 cut(s) 145, 190, 325
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 327
NruI TCGCGA 1 cut(s) 166
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 2 cut(s) 411, 498
PfeI GAWTC 2 cut(s) 30, 152
PkrI GCNGC 3 cut(s) 130, 184, 303
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 325
RruI TCGCGA 1 cut(s) 166
SatI GCNGC 3 cut(s) 129, 183, 302
Sau3AI GATC 3 cut(s) 145, 190, 325
ScrFI CCNGG 1 cut(s) 35
SetI ASST 3 cut(s) 75, 187, 572
SfaNI GCATC 2 cut(s) 13, 235
SfcI CTRYAG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 1 cut(s) 135
SseBI AGGCCT 2 cut(s) 411, 498
StuI AGGCCT 2 cut(s) 411, 498
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 243
TasI AATT 1 cut(s) 135
TfiI GAWTC 2 cut(s) 30, 152
TseI GCWGC 3 cut(s) 128, 182, 301
TspDTI ATGAA 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.