FvH4_2g25380

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000989
Physical Location & Seq
Reverse (-)
20617781 .. 20618417
637 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25380.t1

Sequence Viewer

Length: 273 bp
ATGGTGAGCAAGACGAAGCCAGTCGCCGTCCTCCGCCAAGTTTACGACGTCGGCCACGGCTGCGTCAAAGCTTGTGATAAAGAGTGGTTCCTGTATGGAGAAGAAAAGAAAGAAGCAGTAGAAAAGTATTGCTTTATGACTAGAAAGATTATGACTGAAAACATGTCTCAAACACTTCCTTCAAGTTCTAGAAGTAAGGATGAAGAGAAGCTTGAAAATGGGACCACTAGAAGTGAAGAAGAAGACATACCCAAAAGTAGTGCAGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

91

Amino Acids

10.3

Weight (kDa)

5.26

Isoelectric Point (pI)

63.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AciI CCGC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 52
AcyI GRCGYC 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 2 cut(s) 183, 215
AluBI AGCT 2 cut(s) 71, 211
AluI AGCT 2 cut(s) 71, 211
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 222
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 47
BceAI ACGGC 2 cut(s) 11, 73
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 3 cut(s) 141, 189, 228
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 89, 223
BpiI GAAGAC 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 47
BshFI GGCC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 1 cut(s) 54
BspACI CCGC 1 cut(s) 34
BspANI GGCC 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 89, 223
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 1 cut(s) 52
CviAII CATG 1 cut(s) 163
CviJI RGCY 5 cut(s) 19, 54, 60, 71, 211
CviKI_1 RGCY 5 cut(s) 19, 54, 60, 71, 211
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 222
FaeI CATG 1 cut(s) 166
FaiI YATR 5 cut(s) 96, 137, 152, 164, 248
FalI AAGNNNNNCTT 4 cut(s) 116, 148, 195, 227
FaqI GGGAC 1 cut(s) 235
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 3 cut(s) 141, 189, 228
GluI GCNGC 1 cut(s) 61
HaeIII GGCC 1 cut(s) 54
HgaI GACGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 69, 209
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 43
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 2 cut(s) 50, 53
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 166
LpnPI CCDG 2 cut(s) 33, 104
Lsp1109I GCAGC 1 cut(s) 47
MaeI CTAG 3 cut(s) 141, 189, 228
MaeII ACGT 1 cut(s) 48
MboII GAAGA 5 cut(s) 113, 215, 248, 251, 254
MnlI CCTC 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 60
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 2 cut(s) 89, 223
NspI RCATGY 1 cut(s) 166
PciI ACATGT 1 cut(s) 162
PkrI GCNGC 1 cut(s) 62
PscI ACATGT 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 89, 223
PspPI GGNCC 1 cut(s) 222
SatI GCNGC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 222
SetI ASST 3 cut(s) 51, 73, 213
SinI GGWCC 1 cut(s) 222
SsiI CCGC 1 cut(s) 34
SspMI CTAG 3 cut(s) 141, 189, 228
TaiI ACGT 1 cut(s) 51
TseI GCWGC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 222
XbaI TCTAGA 1 cut(s) 188
XceI RCATGY 1 cut(s) 166
XspI CTAG 3 cut(s) 141, 189, 228
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.