Rmu_sc0010800.1_g000003

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010800.1
OG0000989
Physical Location & Seq
Forward (+)
21099 .. 21574
476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010800.1_g000003.1.cds

Sequence Viewer

Length: 309 bp
atggtgatggagatgatgtgcccgcttcaagatgtgggaactagggatccatttacatcttctgatgaatggtaccagtatggggcagaaaagaaagaagcagtcgaaaaatactgctcttctgtaaggacaagagaccttatgtctgaaaccctgtctcaaacacttccttcaagttctggaagtaaggaagaagtgaagattgaaaatgcgactactggaagcagagaagaagacatacccaaaagtagtgcagaagagtactgtattcaagaggtttacattttttatttatacacaggtttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

102

Amino Acids

11.63

Weight (kDa)

4.41

Isoelectric Point (pI)

52.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 307
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 72
AciI CCGC 1 cut(s) 23
AclWI GGATC 2 cut(s) 41, 54
AfaI GTAC 2 cut(s) 74, 263
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 4 cut(s) 29, 174, 206, 272
AhdI GACNNNNNGTC 1 cut(s) 142
AloI GAACNNNNNNTCC 2 cut(s) 31, 63
Alw26I GTCTC 2 cut(s) 129, 162
AlwI GGATC 2 cut(s) 41, 54
Asp718I GGTACC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 23
BamHI GGATCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 72
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
BbsI GAAGAC 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 129, 162
BfaI CTAG 1 cut(s) 42
BmcAI AGTACT 1 cut(s) 263
BmeRI GACNNNNNGTC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 48, 74
BpiI GAAGAC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 129
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 76, 223
BseLI CCNNNNNNNGG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 76, 223
BseSI GKGCMC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 2 cut(s) 129, 162
Bso31I GGTCTC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 48, 74
BspPI GGATC 2 cut(s) 41, 54
BspQI GCTCTTC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 129
BsrI ACTGG 2 cut(s) 76, 223
BssMI GATC 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 2 cut(s) 124, 252
BstC8I GCNNGC 1 cut(s) 23
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 2 cut(s) 129, 162
BstMBI GATC 1 cut(s) 46
BstSLI GKGCMC 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 73, 262
CviQI GTAC 2 cut(s) 73, 262
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DriI GACNNNNNGTC 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 124, 252
Eam1105I GACNNNNNGTC 1 cut(s) 142
EarI CTCTTC 2 cut(s) 124, 252
Eco31I GGTCTC 1 cut(s) 129
FaiI YATR 5 cut(s) 81, 143, 239, 295, 307
FauI CCCGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 42
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 64, 148
Hpy188III TCNNGA 3 cut(s) 29, 180, 272
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 1 cut(s) 254
KpnI GGTACC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 89, 165, 167, 204, 285
MaeI CTAG 1 cut(s) 42
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 7 cut(s) 51, 111, 203, 211, 242, 245, 269
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 23
MnlI CCTC 1 cut(s) 268
NdeII GATC 1 cut(s) 46
NlaIV GGNNCC 2 cut(s) 48, 74
PciSI GCTCTTC 1 cut(s) 124
PsiI TTATAA 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 48, 74
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 2 cut(s) 74, 263
RsaNI GTAC 2 cut(s) 73, 262
SapI GCTCTTC 1 cut(s) 124
Sau3AI GATC 1 cut(s) 46
ScaI AGTACT 1 cut(s) 263
SduI GDGCHC 1 cut(s) 23
SetI ASST 3 cut(s) 141, 279, 304
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 105
TatI WGTACW 1 cut(s) 261
TspDTI ATGAA 1 cut(s) 81
XspI CTAG 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.