Rh5AG393800

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000989
Physical Location & Seq
Forward (+)
68250074 .. 68252994
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG393800.1

Sequence Viewer

Length: 360 bp
ATGTCATTTTTGTTCCACTGTCATGTCTTTCGCGAATCTTTTTCATACATGCATGTGTTAAAAGTTCCTTGTACATATTTTGTAGAGAAACATAGATGTGATGTTTTAAGAACAGAGCCTTATCGTGTGGATGTTGATGGCCGCATCTTTTGGAAATTAAAGGGTTACAACAATGGAGAAGATATCGTGCTTCAAGATTTGGGGGCCTGGGATGCAGTTGTATCTAAAGAAGAATGGTTTGTTTATGGTGTGGAGACAAAGGAAGTAATTGACAATTACTGTTCTTCTTTAAGGAGAAAAAAGTCTAGTGGAACCGTGTCGCAAACTGTTCCTCGTGAAAGCGATGAAGAAAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

119

Amino Acids

14.04

Weight (kDa)

5.79

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 33
AciI CCGC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 139
AfaI GTAC 1 cut(s) 73
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 248
AoxI GGCC 2 cut(s) 139, 204
AspS9I GGNCC 1 cut(s) 204
BauI CACGAG 1 cut(s) 333
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 306
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 2 cut(s) 205, 313
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 2 cut(s) 153, 202
BsaJI CCNNGG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 136, 217
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 2 cut(s) 141, 206
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 2 cut(s) 141, 206
Bsp1407I TGTACA 1 cut(s) 71
Bsp68I TCGCGA 1 cut(s) 33
BspACI CCGC 1 cut(s) 142
BspANI GGCC 2 cut(s) 141, 206
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 205, 313
BsrGI TGTACA 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 207
BssSI CACGAG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 4 cut(s) 20, 281, 316, 328
BstAUI TGTACA 1 cut(s) 71
BstF5I GGATG 2 cut(s) 136, 217
BstFNI CGCG 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 3 cut(s) 52, 56, 358
BstSCI CCNGG 1 cut(s) 206
BstUI CGCG 1 cut(s) 33
BsuRI GGCC 2 cut(s) 141, 206
BtsCI GGATG 2 cut(s) 136, 217
BtsIMutI CAGTG 1 cut(s) 16
BtuMI TCGCGA 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 72
CviAII CATG 4 cut(s) 23, 49, 53, 355
CviJI RGCY 3 cut(s) 118, 141, 206
CviKI_1 RGCY 3 cut(s) 118, 141, 206
CviQI GTAC 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 139
Eco32I GATATC 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 54
FaeI CATG 4 cut(s) 26, 52, 56, 358
FaiI YATR 8 cut(s) 24, 46, 50, 54, 76, 93, 246, 356
FatI CATG 4 cut(s) 22, 48, 52, 354
Fnu4HI GCNGC 1 cut(s) 142
FokI GGATG 2 cut(s) 143, 224
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 306
GluI GCNGC 1 cut(s) 142
HaeIII GGCC 2 cut(s) 141, 206
Hin1II CATG 4 cut(s) 26, 52, 56, 358
HinfI GANTC 1 cut(s) 35
Hpy188III TCNNGA 3 cut(s) 32, 194, 335
HpyCH4III ACNGT 4 cut(s) 20, 281, 316, 328
HpyCH4V TGCA 2 cut(s) 52, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
Hsp92II CATG 4 cut(s) 26, 52, 56, 358
LpnPI CCDG 2 cut(s) 193, 220
LweI GCATC 2 cut(s) 153, 202
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 164
MboII GAAGA 4 cut(s) 191, 242, 276, 359
MluCI AATT 3 cut(s) 155, 267, 274
MnlI CCTC 1 cut(s) 342
Mph1103I ATGCAT 1 cut(s) 54
MseI TTAA 4 cut(s) 59, 107, 158, 290
MslI CAYNNNNRTG 3 cut(s) 21, 53, 96
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 212
NlaIII CATG 4 cut(s) 26, 52, 56, 358
NlaIV GGNNCC 2 cut(s) 205, 313
NruI TCGCGA 1 cut(s) 33
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 3 cut(s) 52, 56, 358
PciI ACATGT 1 cut(s) 354
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 143
PscI ACATGT 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 205, 313
PspPI GGNCC 1 cut(s) 204
RruI TCGCGA 1 cut(s) 33
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 3 cut(s) 21, 53, 96
SaqAI TTAA 4 cut(s) 59, 107, 158, 290
SatI GCNGC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 208
SfaNI GCATC 2 cut(s) 153, 202
SmiMI CAYNNNNRTG 3 cut(s) 21, 53, 96
Sse9I AATT 3 cut(s) 155, 267, 274
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 4 cut(s) 20, 281, 316, 328
TasI AATT 3 cut(s) 155, 267, 274
TatI WGTACW 1 cut(s) 71
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 4 cut(s) 59, 107, 158, 290
Tru9I TTAA 4 cut(s) 59, 107, 158, 290
TscAI CASTG 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 33, 360
TspRI CASTG 1 cut(s) 23
XceI RCATGY 3 cut(s) 52, 56, 358
XspI CTAG 1 cut(s) 306
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.