Rroxscaffold_3G00238670

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000989
Physical Location & Seq
Reverse (-)
26915686 .. 26916699
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238670.1

Sequence Viewer

Length: 426 bp
ATGGCGAGGAGCTGGATAGAAGAACAGCATGAAAAGATTGTTGAAAGCGAAAAGGAAGCAAAAGGAAAAGTTAATGCAGCCAAAGATAAGTTCAAACATAGATGTGGTGTTTTAAGAACGGAGCCTTATCATGTGGATGTTGATGGCCGCATCTTTTGGAAATTAAAGGGTTACAACAATGGAGAAGATATTGTGCTTCAAGATTTGGGGGCCTGGGATGCAGTTGTATCTAAAGAAGAATGGTTTGTTTGTGGTGCGGAGACAAAGGAAGCAATGGACAATTACTATAACACTTTAAGCTCTCCAGAACTGAAAGTTGTGTTTGCTTATAAAGGTAATAACTCGAGTGTTTGCTTGGTTTGCAGGAGAAAAAAGTCTAGTGGAACCGTGTCGCAAACTGTTCCATCCAGCAAATTGTTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

141

Amino Acids

16.0

Weight (kDa)

8.29

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AciI CCGC 2 cut(s) 148, 257
AcoI YGGCCR 1 cut(s) 145
AgsI TTSAA 3 cut(s) 44, 94, 200
AjnI CCWGG 1 cut(s) 212
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 2 cut(s) 12, 300
AluI AGCT 2 cut(s) 12, 300
Alw26I GTCTC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 2 cut(s) 145, 210
ApeKI GCWGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 210
AvaI CYCGRG 1 cut(s) 343
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 137, 412
BciT130I CCWGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 378
BisI GCNGC 2 cut(s) 78, 148
BlsI GCNGC 2 cut(s) 79, 149
Bme1390I CCNGG 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 3 cut(s) 123, 211, 385
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 159, 208
BpmI CTGGAG 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 3 cut(s) 142, 223, 404
BseMI GCAATG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 2 cut(s) 147, 212
BsiHKCI CYCGRG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 2 cut(s) 147, 212
BsoBI CYCGRG 1 cut(s) 343
BspACI CCGC 2 cut(s) 148, 257
BspANI GGCC 2 cut(s) 147, 212
BspLI GGNNCC 3 cut(s) 123, 211, 385
BsrDI GCAATG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 388, 400
BstF5I GGATG 3 cut(s) 142, 223, 404
BstMAI GTCTC 1 cut(s) 254
BstMWI GCNNNNNNNGC 2 cut(s) 218, 360
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 89
BsuRI GGCC 2 cut(s) 147, 212
BtsCI GGATG 3 cut(s) 142, 223, 404
Cfr13I GGNCC 1 cut(s) 210
CviAII CATG 2 cut(s) 29, 131
CviJI RGCY 6 cut(s) 12, 80, 124, 147, 212, 300
CviKI_1 RGCY 6 cut(s) 12, 80, 124, 147, 212, 300
EaeI YGGCCR 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 212
FaeI CATG 2 cut(s) 32, 134
FaiI YATR 5 cut(s) 30, 99, 132, 288, 330
FatI CATG 2 cut(s) 28, 130
Fnu4HI GCNGC 2 cut(s) 78, 148
FokI GGATG 3 cut(s) 149, 230, 391
Fsp4HI GCNGC 2 cut(s) 78, 148
FspBI CTAG 1 cut(s) 378
GluI GCNGC 2 cut(s) 78, 148
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 2 cut(s) 147, 212
Hin1II CATG 2 cut(s) 32, 134
Hpy166II GTNNAC 1 cut(s) 420
Hpy188III TCNNGA 2 cut(s) 200, 305
Hpy8I GTNNAC 1 cut(s) 420
HpyCH4III ACNGT 2 cut(s) 388, 400
HpyCH4V TGCA 3 cut(s) 77, 221, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 360
Hsp92II CATG 2 cut(s) 32, 134
LmnI GCTCC 2 cut(s) 9, 121
LpnPI CCDG 5 cut(s) 199, 226, 318, 349, 421
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 2 cut(s) 159, 208
MaeI CTAG 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 3 cut(s) 32, 197, 248
MluCI AATT 3 cut(s) 161, 280, 413
MseI TTAA 4 cut(s) 72, 113, 164, 296
MslI CAYNNNNRTG 2 cut(s) 102, 135
MspR9I CCNGG 1 cut(s) 214
MvaI CCWGG 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 218, 360
NlaIII CATG 2 cut(s) 32, 134
NlaIV GGNNCC 3 cut(s) 123, 211, 385
PaeR7I CTCGAG 1 cut(s) 343
PkrI GCNGC 2 cut(s) 79, 149
PsiI TTATAA 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 3 cut(s) 123, 211, 385
PspPI GGNCC 1 cut(s) 210
PspXI VCTCGAGB 1 cut(s) 343
RseI CAYNNNNRTG 2 cut(s) 102, 135
SaqAI TTAA 4 cut(s) 72, 113, 164, 296
SatI GCNGC 2 cut(s) 78, 148
Sau96I GGNCC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 214
SetI ASST 3 cut(s) 14, 302, 337
SfaNI GCATC 2 cut(s) 159, 208
Sfr274I CTCGAG 1 cut(s) 343
SlaI CTCGAG 1 cut(s) 343
SmiMI CAYNNNNRTG 2 cut(s) 102, 135
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 3 cut(s) 161, 280, 413
SsiI CCGC 2 cut(s) 148, 257
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 212
TaaI ACNGT 2 cut(s) 388, 400
TaqI TCGA 1 cut(s) 344
TasI AATT 3 cut(s) 161, 280, 413
TauI GCSGC 1 cut(s) 150
Tru1I TTAA 4 cut(s) 72, 113, 164, 296
Tru9I TTAA 4 cut(s) 72, 113, 164, 296
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 343
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.