Rh2DG552000

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000989
Physical Location & Seq
Reverse (-)
78080863 .. 78086170
5308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG552000.1

Sequence Viewer

Length: 372 bp
ATGACAGGAGGAGTATACTGTATGGAGCAGAAAAGAAAGAAGCAGTTGAAAAGAGACAATGCTGCTTCAACTTCAGATCACGAAACTATTATTTCGCGACTAAAGACTGAAGCAGCTCAAGCTCATGCAGAGTTGCTTGAAGCAGAAACCTTGAATTCGGGCTATGGTGATGAAGATGACGTGCTGCTTCAAGATGTGGGAACTTGGGATCCATTTACATCTTCTGATGAAAAATGGACAAGAAACCTTATGAGTGAAACTCCGTCTCAAACACTTACTTCAAGTTTTGGAAGTAGGGAAGAAGAGAAGCTTGAAAATGTGACCACTGGAGGTAAAGAAGAAGTCATACCCAAAAGTAGTGAAGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

123

Amino Acids

13.7

Weight (kDa)

4.56

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 97
AclWI GGATC 2 cut(s) 203, 216
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 57, 129
AgsI TTSAA 7 cut(s) 49, 69, 140, 154, 191, 282, 314
AjiI CACGTC 1 cut(s) 181
AloI GAACNNNNNNTCC 2 cut(s) 193, 225
AluBI AGCT 3 cut(s) 116, 122, 310
AluI AGCT 3 cut(s) 116, 122, 310
Alw26I GTCTC 2 cut(s) 48, 270
AlwI GGATC 2 cut(s) 203, 216
ApeKI GCWGC 3 cut(s) 62, 113, 184
ApoI RAATTY 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 179
BamHI GGATCC 1 cut(s) 208
BarI GAAGNNNNNNTAC 2 cut(s) 330, 362
BbvI GCAGC 3 cut(s) 49, 125, 171
BcoDI GTCTC 2 cut(s) 48, 270
BisI GCNGC 3 cut(s) 63, 114, 185
BlsI GCNGC 3 cut(s) 64, 115, 186
BmgBI CACGTC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 244, 276
BpmI CTGGAG 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 3 cut(s) 49, 125, 171
Bsh1236I CGCG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 48, 270
BsmBI CGTCTC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 76, 208
Bsp68I TCGCGA 1 cut(s) 97
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 210
BspPI GGATC 2 cut(s) 203, 216
BsrI ACTGG 1 cut(s) 331
BssMI GATC 2 cut(s) 76, 208
BssNAI GTATAC 1 cut(s) 16
Bst1107I GTATAC 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 297
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 2 cut(s) 79, 211
BstMAI GTCTC 2 cut(s) 48, 270
BstMBI GATC 2 cut(s) 76, 208
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 3 cut(s) 49, 125, 171
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BstZ17I GTATAC 1 cut(s) 16
BtrI CACGTC 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 324
BtuMI TCGCGA 1 cut(s) 97
CviAII CATG 1 cut(s) 125
CviJI RGCY 4 cut(s) 116, 122, 162, 310
CviKI_1 RGCY 4 cut(s) 116, 122, 162, 310
DpnI GATC 2 cut(s) 78, 210
DpnII GATC 2 cut(s) 76, 208
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco57I CTGAAG 2 cut(s) 57, 129
EcoRI GAATTC 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 1 cut(s) 128
FaiI YATR 6 cut(s) 16, 23, 126, 165, 251, 347
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 1 cut(s) 124
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 63, 114, 185
Fsp4HI GCNGC 3 cut(s) 63, 114, 185
GluI GCNGC 3 cut(s) 63, 114, 185
GsuI CTGGAG 1 cut(s) 348
Hin1II CATG 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 308
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 76, 226
Hpy188III TCNNGA 3 cut(s) 80, 96, 191
Hpy8I GTNNAC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 2 cut(s) 76, 208
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 1 cut(s) 312
Lsp1109I GCAGC 3 cut(s) 49, 125, 171
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 78, 210
MboI GATC 2 cut(s) 76, 208
MboII GAAGA 5 cut(s) 185, 213, 311, 314, 350
MflI RGATCY 1 cut(s) 208
MluCI AATT 1 cut(s) 154
MnlI CCTC 1 cut(s) 323
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 2 cut(s) 76, 208
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 319
NruI TCGCGA 1 cut(s) 97
PkrI GCNGC 3 cut(s) 64, 115, 186
PspN4I GGNNCC 1 cut(s) 210
PsuI RGATCY 1 cut(s) 208
RruI TCGCGA 1 cut(s) 97
SatI GCNGC 3 cut(s) 63, 114, 185
Sau3AI GATC 2 cut(s) 76, 208
SetI ASST 7 cut(s) 118, 124, 152, 183, 249, 312, 334
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 1 cut(s) 154
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 1 cut(s) 183
TasI AATT 1 cut(s) 154
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 3 cut(s) 62, 113, 184
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 186, 243
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 331
XapI RAATTY 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.