WSTF, HB1, Itc1p, MBD9 motif 1
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-4CXXC_R1 | PF10497 | 12 - 111 | 1.7e-36 | Zinc-finger domain of monoamine-oxidase A repressor R1 |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1108 |
| AciI | CCGC | 4 cut(s) | 982, 1369, 1579, 1688 |
| AclWI | GGATC | 3 cut(s) | 38, 518, 551 |
| AcoI | YGGCCR | 5 cut(s) | 3, 25, 294, 979, 1576 |
| AcsI | RAATTY | 6 cut(s) | 352, 406, 439, 884, 914, 1090 |
| AcuI | CTGAAG | 2 cut(s) | 131, 201 |
| AcyI | GRCGYC | 1 cut(s) | 95 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 222, 461, 1108, 1150 |
| AflIII | ACRYGT | 1 cut(s) | 1791 |
| AhlI | ACTAGT | 1 cut(s) | 1742 |
| AjnI | CCWGG | 2 cut(s) | 985, 1643 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 294, 326, 927, 959 |
| Alw21I | GWGCWC | 1 cut(s) | 1420 |
| Alw26I | GTCTC | 4 cut(s) | 538, 571, 731, 1685 |
| AlwI | GGATC | 3 cut(s) | 38, 518, 551 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1716 |
| Ama87I | CYCGRG | 1 cut(s) | 347 |
| AoxI | GGCC | 8 cut(s) | 3, 25, 262, 294, 708, 979, 1576, 1641 |
| ApeKI | GCWGC | 6 cut(s) | 126, 513, 546, 893, 1340, 1472 |
| ApoI | RAATTY | 6 cut(s) | 352, 406, 439, 884, 914, 1090 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 663 |
| AspLEI | GCGC | 1 cut(s) | 960 |
| AspS9I | GGNCC | 2 cut(s) | 344, 1641 |
| AsuHPI | GGTGA | 4 cut(s) | 53, 668, 959, 1261 |
| AsuNHI | GCTAGC | 1 cut(s) | 431 |
| AvaI | CYCGRG | 1 cut(s) | 347 |
| AvaII | GGWCC | 1 cut(s) | 344 |
| AxyI | CCTNAGG | 3 cut(s) | 456, 807, 852 |
| BauI | CACGAG | 1 cut(s) | 1770 |
| BbsI | GAAGAC | 2 cut(s) | 83, 272 |
| Bbv12I | GWGCWC | 1 cut(s) | 1420 |
| BbvI | GCAGC | 6 cut(s) | 113, 525, 558, 905, 1352, 1484 |
| BccI | CCATC | 2 cut(s) | 536, 1568 |
| BceAI | ACGGC | 1 cut(s) | 309 |
| BciT130I | CCWGG | 2 cut(s) | 987, 1645 |
| BclI | TGATCA | 1 cut(s) | 415 |
| BcoDI | GTCTC | 4 cut(s) | 538, 571, 731, 1685 |
| BcuI | ACTAGT | 1 cut(s) | 1742 |
| BfaI | CTAG | 3 cut(s) | 81, 432, 1743 |
| BfmI | CTRYAG | 4 cut(s) | 247, 1037, 1068, 1161 |
| BisI | GCNGC | 8 cut(s) | 127, 514, 547, 894, 982, 1341, 1473, 1579 |
| BlsI | GCNGC | 8 cut(s) | 128, 515, 548, 895, 983, 1342, 1474, 1580 |
| Bme1390I | CCNGG | 2 cut(s) | 987, 1645 |
| Bme18I | GGWCC | 1 cut(s) | 344 |
| BmeT110I | CYCGRG | 1 cut(s) | 347 |
| BmgT120I | GGNCC | 2 cut(s) | 344, 1641 |
| BmiI | GGNNCC | 6 cut(s) | 346, 1059, 1100, 1554, 1642, 1750 |
| BmrFI | CCNGG | 2 cut(s) | 987, 1645 |
| BmsI | GCATC | 6 cut(s) | 631, 847, 1128, 1528, 1590, 1639 |
| BmtI | GCTAGC | 1 cut(s) | 435 |
| BpiI | GAAGAC | 2 cut(s) | 83, 272 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 894, 926 |
| Bpu10I | CCTNAGC | 1 cut(s) | 792 |
| BpuEI | CTTGAG | 2 cut(s) | 1349, 1461 |
| BsaHI | GRCGYC | 1 cut(s) | 95 |
| BsaJI | CCNNGG | 6 cut(s) | 297, 537, 570, 711, 985, 1644 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 30 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 222, 461, 1108, 1150 |
| Bse118I | RCCGGY | 1 cut(s) | 69 |
| Bse1I | ACTGG | 3 cut(s) | 64, 209, 280 |
| Bse21I | CCTNAGG | 3 cut(s) | 456, 807, 852 |
| BseBI | CCWGG | 2 cut(s) | 987, 1645 |
| BseDI | CCNNGG | 6 cut(s) | 297, 537, 570, 711, 985, 1644 |
| BseGI | GGATG | 7 cut(s) | 526, 547, 559, 580, 862, 1573, 1654 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 222, 461, 1108, 1150 |
| BseMII | CTCAG | 9 cut(s) | 447, 783, 798, 843, 1122, 1226, 1234, 1259, 1479 |
| BseNI | ACTGG | 3 cut(s) | 64, 209, 280 |
| BseRI | GAGGAG | 6 cut(s) | 473, 988, 1070, 1285, 1352, 1410 |
| BseXI | GCAGC | 6 cut(s) | 113, 525, 558, 905, 1352, 1484 |
| BsgI | GTGCAG | 2 cut(s) | 112, 912 |
| BshFI | GGCC | 8 cut(s) | 5, 27, 264, 296, 710, 981, 1578, 1643 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1420 |
| BsiHKCI | CYCGRG | 1 cut(s) | 347 |
| BsiSI | CCGG | 3 cut(s) | 6, 28, 70 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 222, 461, 1108, 1150 |
| BsmAI | GTCTC | 4 cut(s) | 538, 571, 731, 1685 |
| BsmI | GAATGC | 3 cut(s) | 124, 761, 813 |
| BsnI | GGCC | 8 cut(s) | 5, 27, 264, 296, 710, 981, 1578, 1643 |
| BsoBI | CYCGRG | 1 cut(s) | 347 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1420 |
| Bsp143I | GATC | 5 cut(s) | 30, 415, 523, 556, 619 |
| BspACI | CCGC | 4 cut(s) | 982, 1369, 1579, 1688 |
| BspANI | GGCC | 8 cut(s) | 5, 27, 264, 296, 710, 981, 1578, 1643 |
| BspCNI | CTCAG | 9 cut(s) | 448, 784, 799, 844, 1123, 1225, 1233, 1260, 1480 |
| BspLI | GGNNCC | 6 cut(s) | 346, 1059, 1100, 1554, 1642, 1750 |
| BspMAI | CTGCAG | 1 cut(s) | 251 |
| BspOI | GCTAGC | 1 cut(s) | 435 |
| BspPI | GGATC | 3 cut(s) | 38, 518, 551 |
| BsrFI | RCCGGY | 1 cut(s) | 69 |
| BsrI | ACTGG | 3 cut(s) | 64, 209, 280 |
| BssAI | RCCGGY | 1 cut(s) | 69 |
| BssECI | CCNNGG | 6 cut(s) | 297, 537, 570, 711, 985, 1644 |
| BssMI | GATC | 5 cut(s) | 30, 415, 523, 556, 619 |
| BssNI | GRCGYC | 1 cut(s) | 95 |
| BssSI | CACGAG | 1 cut(s) | 1770 |
| BssT1I | CCWWGG | 3 cut(s) | 297, 570, 711 |
| Bst2BI | CACGAG | 1 cut(s) | 1770 |
| Bst2UI | CCWGG | 2 cut(s) | 987, 1645 |
| Bst4CI | ACNGT | 4 cut(s) | 337, 1712, 1718, 1765 |
| Bst6I | CTCTTC | 3 cut(s) | 177, 599, 619 |
| BstACI | GRCGYC | 1 cut(s) | 95 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 641 |
| BstC8I | GCNNGC | 5 cut(s) | 71, 124, 433, 975, 979 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1148 |
| BstF5I | GGATG | 7 cut(s) | 526, 547, 559, 580, 862, 1573, 1654 |
| BstHHI | GCGC | 1 cut(s) | 960 |
| BstKTI | GATC | 5 cut(s) | 33, 418, 526, 559, 622 |
| BstMAI | GTCTC | 4 cut(s) | 538, 571, 731, 1685 |
| BstMBI | GATC | 5 cut(s) | 30, 415, 523, 556, 619 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 135, 641, 802, 866, 1375, 1478, 1649 |
| BstNI | CCWGG | 2 cut(s) | 987, 1645 |
| BstNSI | RCATGY | 2 cut(s) | 1021, 1795 |
| BstSCI | CCNGG | 2 cut(s) | 985, 1643 |
| BstSFI | CTRYAG | 4 cut(s) | 247, 1037, 1068, 1161 |
| BstV1I | GCAGC | 6 cut(s) | 113, 525, 558, 905, 1352, 1484 |
| BstV2I | GAAGAC | 2 cut(s) | 83, 272 |
| BstX2I | RGATCY | 1 cut(s) | 30 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 968 |
| BstYI | RGATCY | 1 cut(s) | 30 |
| Bsu36I | CCTNAGG | 3 cut(s) | 456, 807, 852 |
| BsuRI | GGCC | 8 cut(s) | 5, 27, 264, 296, 710, 981, 1578, 1643 |
| BtsCI | GGATG | 7 cut(s) | 526, 547, 559, 580, 862, 1573, 1654 |
| BtsIMutI | CAGTG | 2 cut(s) | 71, 273 |
| Cac8I | GCNNGC | 5 cut(s) | 71, 124, 433, 975, 979 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1716 |
| CfoI | GCGC | 1 cut(s) | 960 |
| Cfr10I | RCCGGY | 1 cut(s) | 69 |
| Cfr13I | GGNCC | 2 cut(s) | 344, 1641 |
| CseI | GACGC | 1 cut(s) | 84 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 286, 321 |
| CviAII | CATG | 7 cut(s) | 1018, 1095, 1292, 1439, 1484, 1753, 1792 |
| DpnI | GATC | 5 cut(s) | 32, 417, 525, 558, 621 |
| DpnII | GATC | 5 cut(s) | 30, 415, 523, 556, 619 |
| EaeI | YGGCCR | 5 cut(s) | 3, 25, 294, 979, 1576 |
| Eam1104I | CTCTTC | 3 cut(s) | 177, 599, 619 |
| EarI | CTCTTC | 3 cut(s) | 177, 599, 619 |
| Eco130I | CCWWGG | 3 cut(s) | 297, 570, 711 |
| Eco147I | AGGCCT | 1 cut(s) | 264 |
| Eco32I | GATATC | 2 cut(s) | 1198, 1621 |
| Eco47I | GGWCC | 1 cut(s) | 344 |
| Eco57I | CTGAAG | 2 cut(s) | 131, 201 |
| Eco81I | CCTNAGG | 3 cut(s) | 456, 807, 852 |
| Eco88I | CYCGRG | 1 cut(s) | 347 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1148 |
| EcoO109I | RGGNCCY | 2 cut(s) | 344, 1641 |
| EcoRI | GAATTC | 2 cut(s) | 406, 439 |
| EcoRII | CCWGG | 2 cut(s) | 985, 1643 |
| EcoRV | GATATC | 2 cut(s) | 1198, 1621 |
| EcoT14I | CCWWGG | 3 cut(s) | 297, 570, 711 |
| EcoT22I | ATGCAT | 1 cut(s) | 1121 |
| ErhI | CCWWGG | 3 cut(s) | 297, 570, 711 |
| FaeI | CATG | 7 cut(s) | 1021, 1098, 1295, 1442, 1487, 1756, 1795 |
| FatI | CATG | 7 cut(s) | 1017, 1094, 1291, 1438, 1483, 1752, 1791 |
| FbaI | TGATCA | 1 cut(s) | 415 |
| Fnu4HI | GCNGC | 8 cut(s) | 127, 514, 547, 894, 982, 1341, 1473, 1579 |
| FokI | GGATG | 7 cut(s) | 533, 554, 566, 587, 869, 1580, 1661 |
| Fsp4HI | GCNGC | 8 cut(s) | 127, 514, 547, 894, 982, 1341, 1473, 1579 |
| FspBI | CTAG | 3 cut(s) | 81, 432, 1743 |
| GlaI | GCGC | 1 cut(s) | 959 |
| GluI | GCNGC | 8 cut(s) | 127, 514, 547, 894, 982, 1341, 1473, 1579 |
| HaeIII | GGCC | 8 cut(s) | 5, 27, 264, 296, 710, 981, 1578, 1643 |
| HapII | CCGG | 3 cut(s) | 6, 28, 70 |
| HgaI | GACGC | 1 cut(s) | 84 |
| HhaI | GCGC | 1 cut(s) | 960 |
| Hin1I | GRCGYC | 1 cut(s) | 95 |
| Hin1II | CATG | 7 cut(s) | 1021, 1098, 1295, 1442, 1487, 1756, 1795 |
| Hin6I | GCGC | 1 cut(s) | 958 |
| HinP1I | GCGC | 1 cut(s) | 958 |
| HincII | GTYRAC | 1 cut(s) | 333 |
| HindII | GTYRAC | 1 cut(s) | 333 |
| HindIII | AAGCTT | 1 cut(s) | 1394 |
| HinfI | GANTC | 6 cut(s) | 38, 106, 935, 1127, 1133, 1224 |
| HpaII | CCGG | 3 cut(s) | 6, 28, 70 |
| HphI | GGTGA | 4 cut(s) | 53, 668, 959, 1261 |
| Hpy166II | GTNNAC | 3 cut(s) | 289, 333, 679 |
| Hpy188III | TCNNGA | 8 cut(s) | 157, 455, 472, 694, 724, 851, 1631, 1772 |
| Hpy8I | GTNNAC | 3 cut(s) | 289, 333, 679 |
| Hpy99I | CGWCG | 2 cut(s) | 23, 100 |
| HpyAV | CCTTC | 7 cut(s) | 169, 296, 364, 376, 490, 1071, 1144 |
| HpyCH4III | ACNGT | 4 cut(s) | 337, 1712, 1718, 1765 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 135, 641, 802, 866, 1375, 1478, 1649 |
| Hsp92I | GRCGYC | 1 cut(s) | 95 |
| Hsp92II | CATG | 7 cut(s) | 1021, 1098, 1295, 1442, 1487, 1756, 1795 |
| HspAI | GCGC | 1 cut(s) | 958 |
| KroI | GCCGGC | 1 cut(s) | 69 |
| KroNI | GCCGGC | 1 cut(s) | 71 |
| Ksp22I | TGATCA | 1 cut(s) | 415 |
| Kzo9I | GATC | 5 cut(s) | 30, 415, 523, 556, 619 |
| LmnI | GCTCC | 5 cut(s) | 190, 1057, 1272, 1423, 1552 |
| Lsp1109I | GCAGC | 6 cut(s) | 113, 525, 558, 905, 1352, 1484 |
| LweI | GCATC | 6 cut(s) | 631, 847, 1128, 1528, 1590, 1639 |
| MaeI | CTAG | 3 cut(s) | 81, 432, 1743 |
| MaeIII | GTNAC | 4 cut(s) | 59, 1601, 1712, 1755 |
| MalI | GATC | 5 cut(s) | 32, 417, 525, 558, 621 |
| MboI | GATC | 5 cut(s) | 30, 415, 523, 556, 619 |
| MfeI | CAATTG | 1 cut(s) | 1704 |
| MflI | RGATCY | 1 cut(s) | 30 |
| MhlI | GDGCHC | 1 cut(s) | 1420 |
| MlyI | GAGTC | 2 cut(s) | 1142, 1218 |
| Mph1103I | ATGCAT | 1 cut(s) | 1121 |
| MroNI | GCCGGC | 1 cut(s) | 69 |
| MroXI | GAANNNNTTC | 1 cut(s) | 663 |
| MseI | TTAA | 5 cut(s) | 821, 1335, 1544, 1595, 1727 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1533 |
| MspI | CCGG | 3 cut(s) | 6, 28, 70 |
| MspR9I | CCNGG | 2 cut(s) | 987, 1645 |
| MunI | CAATTG | 1 cut(s) | 1704 |
| Mva1269I | GAATGC | 3 cut(s) | 124, 761, 813 |
| MvaI | CCWGG | 2 cut(s) | 987, 1645 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 135, 641, 802, 866, 1375, 1478, 1649 |
| NaeI | GCCGGC | 1 cut(s) | 71 |
| NdeII | GATC | 5 cut(s) | 30, 415, 523, 556, 619 |
| NgoMIV | GCCGGC | 1 cut(s) | 69 |
| NheI | GCTAGC | 1 cut(s) | 431 |
| NlaIII | CATG | 7 cut(s) | 1021, 1098, 1295, 1442, 1487, 1756, 1795 |
| NlaIV | GGNNCC | 6 cut(s) | 346, 1059, 1100, 1554, 1642, 1750 |
| NmuCI | GTSAC | 2 cut(s) | 59, 1755 |
| NsiI | ATGCAT | 1 cut(s) | 1121 |
| NspI | RCATGY | 2 cut(s) | 1021, 1795 |
| PceI | AGGCCT | 1 cut(s) | 264 |
| PciI | ACATGT | 1 cut(s) | 1791 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 970 |
| PctI | GAATGC | 3 cut(s) | 124, 761, 813 |
| PdiI | GCCGGC | 1 cut(s) | 71 |
| PdmI | GAANNNNTTC | 1 cut(s) | 663 |
| PfeI | GAWTC | 4 cut(s) | 38, 106, 935, 1127 |
| PflFI | GACNNNGTC | 1 cut(s) | 719 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1108 |
| PkrI | GCNGC | 8 cut(s) | 128, 515, 548, 895, 983, 1342, 1474, 1580 |
| PleI | GAGTC | 2 cut(s) | 1141, 1218 |
| PpsI | GAGTC | 2 cut(s) | 1141, 1218 |
| PpuMI | RGGWCCY | 1 cut(s) | 344 |
| PscI | ACATGT | 1 cut(s) | 1791 |
| Psp5II | RGGWCCY | 1 cut(s) | 344 |
| Psp6I | CCWGG | 2 cut(s) | 985, 1643 |
| PspGI | CCWGG | 2 cut(s) | 985, 1643 |
| PspN4I | GGNNCC | 6 cut(s) | 346, 1059, 1100, 1554, 1642, 1750 |
| PspPI | GGNCC | 2 cut(s) | 344, 1641 |
| PspPPI | RGGWCCY | 1 cut(s) | 344 |
| PstI | CTGCAG | 1 cut(s) | 251 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1716 |
| PsuI | RGATCY | 1 cut(s) | 30 |
| PsyI | GACNNNGTC | 1 cut(s) | 719 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1533 |
| SaqAI | TTAA | 5 cut(s) | 821, 1335, 1544, 1595, 1727 |
| SatI | GCNGC | 8 cut(s) | 127, 514, 547, 894, 982, 1341, 1473, 1579 |
| Sau3AI | GATC | 5 cut(s) | 30, 415, 523, 556, 619 |
| Sau96I | GGNCC | 2 cut(s) | 344, 1641 |
| SchI | GAGTC | 2 cut(s) | 1142, 1218 |
| ScrFI | CCNGG | 2 cut(s) | 987, 1645 |
| SduI | GDGCHC | 1 cut(s) | 1420 |
| SfaNI | GCATC | 6 cut(s) | 631, 847, 1128, 1528, 1590, 1639 |
| SfcI | CTRYAG | 4 cut(s) | 247, 1037, 1068, 1161 |
| SinI | GGWCC | 1 cut(s) | 344 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1533 |
| SmlI | CTYRAG | 2 cut(s) | 1364, 1476 |
| SmoI | CTYRAG | 2 cut(s) | 1364, 1476 |
| SpeI | ACTAGT | 1 cut(s) | 1742 |
| SseBI | AGGCCT | 1 cut(s) | 264 |
| SsiI | CCGC | 4 cut(s) | 982, 1369, 1579, 1688 |
| SspI | AATATT | 1 cut(s) | 769 |
| SspMI | CTAG | 3 cut(s) | 81, 432, 1743 |
| StuI | AGGCCT | 1 cut(s) | 264 |
| StyD4I | CCNGG | 2 cut(s) | 985, 1643 |
| StyI | CCWWGG | 3 cut(s) | 297, 570, 711 |
| TaaI | ACNGT | 4 cut(s) | 337, 1712, 1718, 1765 |
| TaqI | TCGA | 2 cut(s) | 393, 622 |
| TauI | GCSGC | 2 cut(s) | 984, 1581 |
| TfiI | GAWTC | 4 cut(s) | 38, 106, 935, 1127 |
| Tru1I | TTAA | 5 cut(s) | 821, 1335, 1544, 1595, 1727 |
| Tru9I | TTAA | 5 cut(s) | 821, 1335, 1544, 1595, 1727 |
| TscAI | CASTG | 2 cut(s) | 71, 280 |
| TseFI | GTSAC | 2 cut(s) | 59, 1755 |
| TseI | GCWGC | 6 cut(s) | 126, 513, 546, 893, 1340, 1472 |
| Tsp45I | GTSAC | 2 cut(s) | 59, 1755 |
| TspDTI | ATGAA | 7 cut(s) | 411, 1053, 1083, 1089, 1308, 1455, 1797 |
| TspGWI | ACGGA | 3 cut(s) | 63, 494, 1565 |
| TspRI | CASTG | 2 cut(s) | 71, 280 |
| Tth111I | GACNNNGTC | 1 cut(s) | 719 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1108 |
| VpaK11BI | GGWCC | 1 cut(s) | 344 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1148 |
| XapI | RAATTY | 6 cut(s) | 352, 406, 439, 884, 914, 1090 |
| XceI | RCATGY | 2 cut(s) | 1021, 1795 |
| XmnI | GAANNNNTTC | 1 cut(s) | 663 |
| XspI | CTAG | 3 cut(s) | 81, 432, 1743 |
| Zsp2I | ATGCAT | 1 cut(s) | 1121 |