AT5G38690
ERF Family

CONTAINS InterPro DOMAIN s DDT superfamily (InterPro IPR018501), DDT subgroup (InterPro IPR018500), Cell division cycle-associated protein (InterPro IPR018866)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000989
Physical Location & Seq
Reverse (-)
15478701 .. 15483250
4550 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38690.1

Sequence Viewer

Length: 1719 bp
ATGGCGGTGGTGAGTAAGAATCAGACCCAACAACAAACACCAAATCCTGGCGGTGGTGTATCAAGGATCGAAGATTCCACCAACGGAAAGACTTGTCACCAATGTCGACAAAAGAGAACGGATCTTGTTGGATCCTGCGTGACCAAGAAGAAAGACAAGACTTGTCCTATTAAGTTATGCACCAAGTGCATATTGAACAGGTATGGGGAGAACGCACAAGAGGTTGCGTTGAAGAAGGATTGGATTTGTCCCAAGTGTAGAGGAAACTGCAACTGTAGCTACTGCATGAAGAAACGAGGCCAAAAGCCTACCGGGATATTAGTACACACTGCTAAAAAGACTGGCTTCTCTTCTGTCTCAGAGCTTCTTAAAACTAGTGGTTCTGACAAATATTTTTATACAAAGAAGGTGAAACCGGAAGGTGTTGTTGTAGTTTCACCACTGAAACTTGACCAGGAGAATTCTATTGAACAAAAACATGTTAGTATTAAAAAATCGAGAAAAACTAAACGGGAAGAGCTCAAGGATATAAACAACGGCTGCAGCAATGAGAATGTTGTGGTGAAAAAGAGTAATCCAAAGAAGATCAAGCTTTCTGATTCCGTTCATGCGACAACAGAAGTTATCAAGAAAGTATTGGCAGAAGGAAAAAAGAAGAAGACTACAGCAAAAGGTATCAAGGAAAACAATGTAGCGGAGAAAATCAAAAGAATTAAACCTGCTCTCAAAAAGAAAGAGGAGGATCAGGTTGAGATTAAAATACCTCAGGGCAATATCTCAATTACTGTTTCAGGCATTGACTTGGCTCCTGAAGATGCTGGAAATGTATTTCAGTTTTTGGAGTTTTGTTCAGCTTTTGGGAAGGCACTTGATTTGAGGAAAGGACAAGCTGAATGTGTTATACGCGAAATGTTATCTGGGAGAAGCAAAAGAAGACAACAATATTCCACTCTCACACAGATGATAATCCAACTACTTACTGTGATATTAGAGGATAGAGGAGAAACATCCGTTTGCCTGAGTGCAACTGATCCTAGTTGGTTCACTACGATTGGAGAATGTCTCTCGGAATCAGAAGTAAAGCTAGATGATTTCCCTCCTGAAATGTTTGAAAAAGGCATTTCTCAGTATGAGAAGTTGAATTCATCAAAAAGGCTTAAGCTTTTGAATTTCTTATGCGATGAAACGCTTGGCACATTGGTGATGAGGAATTGCATTGATAGCCAAAATATTGAATCTGTTGAAAGGAAAAAAGAAGCAAAAGAAAAGATCAATGCTGCAAAAGATAAGGAGAAACAGCTGAAGCAGAAATTGCAAGATGAGTTGGCTCAAGCCGTAAAAGCCAAAAACGGGATTCCATTGTTGATAACAGAACATGATGCGATTGTATCGCGGATAAATGCAGAAACTCAAGAAGTTTATTCTGAAATGCAAAACGCAATAGACATGCTATCTAAAAAGAGTCAAGGAAGTGATGATGCTGTTAGAACCAACCCGGTCGAATTGGATGACAATGGTCTTATATTCTGGAGATTGAAGTCTTACAATGATGAGCAAAACATTTTGCTTCAAGATTTAGGAAGCTGGAATGAAGTATGTCCTCATGAAAAATGGTTTTCCTTCAGCTCTGAGCAAAAACCAGAGATAGAGAAATACATCTCTTTCATAAGGATGAAACGGGTTCAAGCACAAAAGAATGCAAGTACTATTATTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

572

Amino Acids

64.43

Weight (kDa)

9.19

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 25 - 123 2.3e-34 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 727
AccB7I CCANNNNNTGG 1 cut(s) 47
AccI GTMKAC 1 cut(s) 106
AccII CGCG 2 cut(s) 906, 1393
AciI CCGC 4 cut(s) 5, 51, 695, 1393
AclWI GGATC 6 cut(s) 74, 126, 129, 139, 750, 1025
AcsI RAATTY 3 cut(s) 460, 1141, 1168
AcuI CTGAAG 3 cut(s) 831, 1322, 1606
AdeI CACNNNGTG 1 cut(s) 186
AfaI GTAC 2 cut(s) 324, 1705
AfiI CCNNNNNNNGG 3 cut(s) 47, 53, 1350
AflII CTTAAG 1 cut(s) 1157
AflIII ACRYGT 1 cut(s) 478
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 2 cut(s) 46, 453
AleI CACNNNNGTG 1 cut(s) 1199
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 2 cut(s) 361, 1067
AlwI GGATC 6 cut(s) 74, 126, 129, 139, 750, 1025
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 3 cut(s) 540, 543, 1277
ApoI RAATTY 3 cut(s) 460, 1141, 1168
AsuC2I CCSGG 2 cut(s) 313, 1496
AsuHPI GGTGA 6 cut(s) 22, 89, 421, 429, 574, 1213
AxyI CCTNAGG 1 cut(s) 765
BamHI GGATCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 522
BbsI GAAGAC 2 cut(s) 665, 940
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 3 cut(s) 527, 555, 1264
BceAI ACGGC 2 cut(s) 553, 1319
BciT130I CCWGG 2 cut(s) 48, 455
BcnI CCSGG 2 cut(s) 313, 1496
BcoDI GTCTC 2 cut(s) 361, 1067
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 3 cut(s) 375, 1035, 1085
BfmI CTRYAG 3 cut(s) 274, 541, 663
BfrI CTTAAG 1 cut(s) 1157
BfuAI ACCTGC 1 cut(s) 727
BisI GCNGC 3 cut(s) 541, 544, 1278
BlsI GCNGC 3 cut(s) 542, 545, 1279
BmcAI AGTACT 1 cut(s) 1705
Bme1390I CCNGG 4 cut(s) 48, 313, 455, 1496
BmiI GGNNCC 2 cut(s) 133, 807
BmrFI CCNGG 4 cut(s) 48, 313, 455, 1496
BmsI GCATC 3 cut(s) 805, 1369, 1468
BoxI GACNNNNGTC 1 cut(s) 1515
BpiI GAAGAC 2 cut(s) 665, 940
BplI GAGNNNNNCTC 2 cut(s) 1047, 1079
BpmI CTGGAG 1 cut(s) 1549
BpuEI CTTGAG 3 cut(s) 506, 1314, 1395
BpuMI CCSGG 2 cut(s) 313, 1496
BsaBI GATNNNNATC 1 cut(s) 965
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 53, 1350
Bse1I ACTGG 1 cut(s) 346
Bse21I CCTNAGG 1 cut(s) 765
Bse3DI GCAATG 1 cut(s) 553
Bse8I GATNNNNATC 1 cut(s) 965
BseBI CCWGG 2 cut(s) 48, 455
BseGI GGATG 3 cut(s) 1007, 1513, 1677
BseJI GATNNNNATC 1 cut(s) 965
BseLI CCNNNNNNNGG 3 cut(s) 47, 53, 1350
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 5 cut(s) 372, 779, 1010, 1139, 1620
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 2 cut(s) 752, 1014
BseXI GCAGC 3 cut(s) 527, 555, 1264
Bsh1236I CGCG 2 cut(s) 906, 1393
Bsh1285I CGRYCG 1 cut(s) 1500
BshFI GGCC 1 cut(s) 300
BsiEI CGRYCG 1 cut(s) 1500
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 3 cut(s) 312, 416, 1496
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 47, 53, 1350
BsmAI GTCTC 2 cut(s) 361, 1067
BsmFI GGGAC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 1702
BsnI GGCC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 7 cut(s) 66, 121, 131, 585, 742, 1030, 1269
BspACI CCGC 4 cut(s) 5, 51, 695, 1393
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 5 cut(s) 371, 778, 1011, 1138, 1621
BspFNI CGCG 2 cut(s) 906, 1393
BspHI TCATGA 1 cut(s) 1603
BspLI GGNNCC 2 cut(s) 133, 807
BspMAI CTGCAG 1 cut(s) 545
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 6 cut(s) 74, 126, 129, 139, 750, 1025
BspQI GCTCTTC 1 cut(s) 510
BspTI CTTAAG 1 cut(s) 1157
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 1 cut(s) 346
BssMI GATC 7 cut(s) 66, 121, 131, 585, 742, 1030, 1269
Bst2UI CCWGG 2 cut(s) 48, 455
Bst4CI ACNGT 3 cut(s) 275, 787, 982
Bst6I CTCTTC 2 cut(s) 355, 510
BstAFI CTTAAG 1 cut(s) 1157
BstAPI GCANNNNNTGC 2 cut(s) 186, 1312
BstDEI CTNAG 6 cut(s) 358, 765, 1019, 1125, 1629, 1716
BstF5I GGATG 3 cut(s) 1007, 1513, 1677
BstFNI CGCG 2 cut(s) 906, 1393
BstKTI GATC 7 cut(s) 69, 124, 134, 588, 745, 1033, 1272
BstMAI GTCTC 2 cut(s) 361, 1067
BstMBI GATC 7 cut(s) 66, 121, 131, 585, 742, 1030, 1269
BstMCI CGRYCG 1 cut(s) 1500
BstMWI GCNNNNNNNGC 5 cut(s) 186, 276, 1221, 1312, 1340
BstNI CCWGG 2 cut(s) 48, 455
BstNSI RCATGY 2 cut(s) 482, 1450
BstPAI GACNNNNGTC 1 cut(s) 1515
BstSCI CCNGG 4 cut(s) 46, 311, 453, 1494
BstSFI CTRYAG 3 cut(s) 274, 541, 663
BstUI CGCG 2 cut(s) 906, 1393
BstV1I GCAGC 3 cut(s) 527, 555, 1264
BstV2I GAAGAC 2 cut(s) 665, 940
BstX2I RGATCY 2 cut(s) 121, 131
BstYI RGATCY 2 cut(s) 121, 131
Bsu36I CCTNAGG 1 cut(s) 765
BsuRI GGCC 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 1194
BtsCI GGATG 3 cut(s) 1007, 1513, 1677
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 327, 440
BveI ACCTGC 1 cut(s) 727
CciI TCATGA 1 cut(s) 1603
Csp6I GTAC 2 cut(s) 323, 1704
CviAII CATG 6 cut(s) 286, 479, 608, 1376, 1447, 1604
CviQI GTAC 2 cut(s) 323, 1704
DdeI CTNAG 6 cut(s) 358, 765, 1019, 1125, 1629, 1716
DpnI GATC 7 cut(s) 68, 123, 133, 587, 744, 1032, 1271
DpnII GATC 7 cut(s) 66, 121, 131, 585, 742, 1030, 1269
DraIII CACNNNGTG 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 355, 510
EarI CTCTTC 2 cut(s) 355, 510
Ecl136II GAGCTC 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 522
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 3 cut(s) 831, 1322, 1606
Eco81I CCTNAGG 1 cut(s) 765
EcoICRI GAGCTC 1 cut(s) 520
EcoRI GAATTC 2 cut(s) 460, 1141
EcoRII CCWGG 2 cut(s) 46, 453
EcoT38I GRGCYC 1 cut(s) 522
FaeI CATG 6 cut(s) 289, 482, 611, 1379, 1450, 1607
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 234
FatI CATG 6 cut(s) 285, 478, 607, 1375, 1446, 1603
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 541, 544, 1278
FokI GGATG 3 cut(s) 994, 1520, 1684
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 3 cut(s) 541, 544, 1278
FspBI CTAG 3 cut(s) 375, 1035, 1085
GluI GCNGC 3 cut(s) 541, 544, 1278
GsuI CTGGAG 1 cut(s) 1549
HaeIII GGCC 1 cut(s) 300
HapII CCGG 3 cut(s) 312, 416, 1496
Hin1II CATG 6 cut(s) 289, 482, 611, 1379, 1450, 1607
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HindIII AAGCTT 2 cut(s) 590, 1160
HinfI GANTC 7 cut(s) 19, 74, 599, 1070, 1235, 1354, 1462
HpaII CCGG 3 cut(s) 312, 416, 1496
HphI GGTGA 6 cut(s) 22, 89, 421, 429, 574, 1213
Hpy166II GTNNAC 3 cut(s) 107, 325, 1044
Hpy188I TCNGA 8 cut(s) 24, 361, 385, 598, 1069, 1075, 1426, 1630
Hpy188III TCNNGA 8 cut(s) 498, 628, 809, 1100, 1412, 1528, 1571, 1604
Hpy8I GTNNAC 3 cut(s) 107, 325, 1044
HpyAV CCTTC 6 cut(s) 229, 400, 413, 638, 856, 1630
HpyCH4III ACNGT 3 cut(s) 275, 787, 982
HpyF10VI GCNNNNNNNGC 5 cut(s) 186, 276, 1221, 1312, 1340
HpyF3I CTNAG 6 cut(s) 358, 765, 1019, 1125, 1629, 1716
Hsp92II CATG 6 cut(s) 289, 482, 611, 1379, 1450, 1607
Kzo9I GATC 7 cut(s) 66, 121, 131, 585, 742, 1030, 1269
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 1 cut(s) 811
Lsp1109I GCAGC 3 cut(s) 527, 555, 1264
LweI GCATC 3 cut(s) 805, 1369, 1468
MaeI CTAG 3 cut(s) 375, 1035, 1085
MaeIII GTNAC 2 cut(s) 95, 139
MalI GATC 7 cut(s) 68, 123, 133, 587, 744, 1032, 1271
MboI GATC 7 cut(s) 66, 121, 131, 585, 742, 1030, 1269
MflI RGATCY 2 cut(s) 121, 131
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 8 cut(s) 460, 711, 780, 1141, 1168, 1210, 1310, 1502
MlyI GAGTC 1 cut(s) 1471
MmeI TCCRAC 2 cut(s) 109, 994
MseI TTAA 6 cut(s) 171, 369, 489, 714, 756, 1158
MslI CAYNNNNRTG 3 cut(s) 959, 1199, 1670
MspA1I CMGCKG 1 cut(s) 1300
MspCI CTTAAG 1 cut(s) 1157
MspI CCGG 3 cut(s) 312, 416, 1496
MspR9I CCNGG 4 cut(s) 48, 313, 455, 1496
Mva1269I GAATGC 1 cut(s) 1702
MvaI CCWGG 2 cut(s) 48, 455
MvnI CGCG 2 cut(s) 906, 1393
MwoI GCNNNNNNNGC 5 cut(s) 186, 276, 1221, 1312, 1340
NciI CCSGG 2 cut(s) 313, 1496
NdeII GATC 7 cut(s) 66, 121, 131, 585, 742, 1030, 1269
NlaIII CATG 6 cut(s) 289, 482, 611, 1379, 1450, 1607
NlaIV GGNNCC 2 cut(s) 133, 807
NmuCI GTSAC 2 cut(s) 95, 139
NspI RCATGY 2 cut(s) 482, 1450
OliI CACNNNNGTG 1 cut(s) 1199
PagI TCATGA 1 cut(s) 1603
PciI ACATGT 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 510
PctI GAATGC 1 cut(s) 1702
PfeI GAWTC 6 cut(s) 19, 74, 599, 1070, 1235, 1354
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 3 cut(s) 542, 545, 1279
PleI GAGTC 1 cut(s) 1470
PpsI GAGTC 1 cut(s) 1470
PscI ACATGT 1 cut(s) 478
PshAI GACNNNNGTC 1 cut(s) 1515
Psp124BI GAGCTC 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 46, 453
PspGI CCWGG 2 cut(s) 46, 453
PspN4I GGNNCC 2 cut(s) 133, 807
PstI CTGCAG 1 cut(s) 545
PsuI RGATCY 2 cut(s) 121, 131
PvuII CAGCTG 1 cut(s) 1300
RsaI GTAC 2 cut(s) 324, 1705
RsaNI GTAC 2 cut(s) 323, 1704
RseI CAYNNNNRTG 3 cut(s) 959, 1199, 1670
SacI GAGCTC 1 cut(s) 522
SalI GTCGAC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 6 cut(s) 171, 369, 489, 714, 756, 1158
SatI GCNGC 3 cut(s) 541, 544, 1278
Sau3AI GATC 7 cut(s) 66, 121, 131, 585, 742, 1030, 1269
ScaI AGTACT 1 cut(s) 1705
SchI GAGTC 1 cut(s) 1471
ScrFI CCNGG 4 cut(s) 48, 313, 455, 1496
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 3 cut(s) 805, 1369, 1468
SfcI CTRYAG 3 cut(s) 274, 541, 663
SmiMI CAYNNNNRTG 3 cut(s) 959, 1199, 1670
SmlI CTYRAG 4 cut(s) 521, 1157, 1329, 1410
SmoI CTYRAG 4 cut(s) 521, 1157, 1329, 1410
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 8 cut(s) 460, 711, 780, 1141, 1168, 1210, 1310, 1502
SsiI CCGC 4 cut(s) 5, 51, 695, 1393
SspI AATATT 3 cut(s) 392, 944, 1231
SspMI CTAG 3 cut(s) 375, 1035, 1085
SstI GAGCTC 1 cut(s) 522
StyD4I CCNGG 4 cut(s) 46, 311, 453, 1494
TaaI ACNGT 3 cut(s) 275, 787, 982
TaqI TCGA 4 cut(s) 69, 106, 497, 1500
TasI AATT 8 cut(s) 460, 711, 780, 1141, 1168, 1210, 1310, 1502
TatI WGTACW 2 cut(s) 322, 1703
TfiI GAWTC 6 cut(s) 19, 74, 599, 1070, 1235, 1354
Tru1I TTAA 6 cut(s) 171, 369, 489, 714, 756, 1158
Tru9I TTAA 6 cut(s) 171, 369, 489, 714, 756, 1158
TscAI CASTG 2 cut(s) 334, 447
TseFI GTSAC 2 cut(s) 95, 139
TseI GCWGC 3 cut(s) 540, 543, 1277
Tsp45I GTSAC 2 cut(s) 95, 139
TspDTI ATGAA 8 cut(s) 302, 596, 1134, 1197, 1605, 1620, 1654, 1688
TspGWI ACGGA 4 cut(s) 99, 134, 592, 1000
TspRI CASTG 2 cut(s) 334, 447
Van91I CCANNNNNTGG 1 cut(s) 47
Vha464I CTTAAG 1 cut(s) 1157
XapI RAATTY 3 cut(s) 460, 1141, 1168
XceI RCATGY 2 cut(s) 482, 1450
XmiI GTMKAC 1 cut(s) 106
XspI CTAG 3 cut(s) 375, 1035, 1085
ZrmI AGTACT 1 cut(s) 1705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.