FvH4_2g09180

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000989
Physical Location & Seq
Forward (+)
8090858 .. 8091526
669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09180.t1

Sequence Viewer

Length: 261 bp
ATGGTGAGCAAGACGAAGCAAGTCGCCGTCCTCCGCCAAGTTTACGACGTCGGCCACGGCTGCGTCGAAGGCTATGATGCTGGAAAGGATATGTTGCTTCAAGGTTTGATTTTACCTTTGTCAATGACTAGAAAGATTACGACTGAAAACATGTCTCAAACACTTGCTTCAAGTTATGAAAGCAAGGATGAAGAGAAGCTTGAAAATTGGACTACTAGAAGTGAAGAAGAAGACATACCCAAAAGTAGTGCAGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

87

Amino Acids

9.64

Weight (kDa)

4.71

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AciI CCGC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 52
AcyI GRCGYC 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 3 cut(s) 101, 171, 203
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 159
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
BbsI GAAGAC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 47
BceAI ACGGC 2 cut(s) 11, 73
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 2 cut(s) 129, 216
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 47
BshFI GGCC 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 159
BsnI GGCC 1 cut(s) 54
BspACI CCGC 1 cut(s) 34
BspANI GGCC 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 60, 69
BstNSI RCATGY 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 237
BsuRI GGCC 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 193
CseI GACGC 1 cut(s) 52
CviAII CATG 1 cut(s) 151
CviJI RGCY 4 cut(s) 54, 60, 72, 199
CviKI_1 RGCY 4 cut(s) 54, 60, 72, 199
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EciI GGCGGA 1 cut(s) 23
FaeI CATG 1 cut(s) 154
FaiI YATR 5 cut(s) 75, 92, 152, 177, 236
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 2 cut(s) 129, 216
GluI GCNGC 1 cut(s) 61
HaeIII GGCC 1 cut(s) 54
HgaI GACGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 197
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 3 cut(s) 50, 53, 68
HpyAV CCTTC 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 69
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 154
LpnPI CCDG 1 cut(s) 66
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 129, 216
MaeII ACGT 1 cut(s) 48
MboII GAAGA 4 cut(s) 203, 236, 239, 242
MluCI AATT 1 cut(s) 205
MnlI CCTC 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 60, 69
NlaIII CATG 1 cut(s) 154
NspI RCATGY 1 cut(s) 154
PciI ACATGT 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PkrI GCNGC 1 cut(s) 62
PscI ACATGT 1 cut(s) 150
SatI GCNGC 1 cut(s) 61
SetI ASST 4 cut(s) 51, 106, 118, 201
SfaNI GCATC 1 cut(s) 67
Sse9I AATT 1 cut(s) 205
SsiI CCGC 1 cut(s) 34
SspMI CTAG 2 cut(s) 129, 216
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 205
TseI GCWGC 1 cut(s) 60
TspDTI ATGAA 2 cut(s) 192, 204
XceI RCATGY 1 cut(s) 154
XspI CTAG 2 cut(s) 129, 216
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.