Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000989

Physical Location & Seq

Genomic Coordinates Reverse (-)

6088862 .. 6091895

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1085100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTTGCGCAAAAATTGTTGACTTATTTTGCCGGCAATGAAATATGTGAGGCTCTTAGAATAGAGCCTTACATTGTGGATGCCGATGGACATGCCTTCTGGAAACTGAAAGGCGATTTTGCTGGACATATATTGCTTCAAGATCTGGGAACCTGGGATGGAACTCCATCTGGGGAACGATGGTTCGTCTGCGGTGCTGAAATGAAAGCACCAATTGACAAATACCGCTCTTCTCTGGCTCTAAAGGAAAAACAGCCCAAGAGGGAGCAAGGGCGTTCCAAAATTTCTTCAAGCAAAGAAAAAAAGTTGCAGCTTTCCCAAAAATATGCATACATACAACTATACAAGTTACAAGGATCCGGCTGCATGCCCAAATTTCTGTATAAACTCCTACATGGGAAAGCCGACCATAATTACTTTGTGACGGGGAATGTAAATTTTAAGATGAGCTTTGTCATGGTTATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT WHIM1 zf-4CXXC_R1

Protein Analysis

157

Amino Acids

17.78

Weight (kDa)

9.37

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67270 AT1G67780 AT1G67780 AT5G38690 AT5G38690
fragaria_vesca	FvH4_2g09180 FvH4_2g25380 FvH4_4g11170 FvH4_5g33470 FvH4_6g45330 FvH4_6g45330 FvH4_6g45330 FvH4_6g45330 FvH4_6g45330 FvH4_6g45330 FvH4_6g45330 FvH4_6g45330
malus_domestica	MD07G1040400.v1.1 MD07G1056500.v1.1 MD09G1085000.v1.1 MD09G1085100.v1.1 MD09G1085300.v1.1 MD17G1074500.v1.1
prunus_persica	Prupe.3G239500_v2.0.a1 Prupe.3G239500_v2.0.a1
pyrus_communis	pycom07g02810 pycom07g03200 pycom09g01060 pycom09g01070 pycom17g07520 pycom17g07530
rosa_chinensis	RchiOBHm_Chr2g0163111 RchiOBHm_Chr4g0409761 RchiOBHm_Chr7g0218691
rosa_laevigata	RLG00000021021 RLG00000021374 RLG00000026962
rosa_multiflora	Rmu_sc0001275.1_g000034 Rmu_sc0003984.1_g000018 Rmu_sc0010800.1_g000003 Rmu_sc0035873.1_g000001 Rmu_sc0035874.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087540 Rroxscaffold_3G00238670
rosa_rugosa	Rorug01G0363900 Rorug02G0500600 Rorug07G0320500
rosa_samantha	Rh1AG181000 Rh1BG149300 Rh2AG566900 Rh2BG188900 Rh2BG543200 Rh2BG579200 Rh2CG549100 Rh2DG552000 Rh2DG589500 Rh4BG164100 Rh5AG393800 Rh6DG341600 Rh7BG185700
rosa_wichuraiana	Rw1G015030 Rw2G046940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	9
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	2 cut(s)	192, 226
AclWI	GGATC	2 cut(s)	351, 364
AcsI	RAATTY	3 cut(s)	282, 374, 436
AgsI	TTSAA	2 cut(s)	140, 291
AjnI	CCWGG	1 cut(s)	152
AloI	GAACNNNNNNTCC	2 cut(s)	167, 199
AluBI	AGCT	2 cut(s)	313, 450
AluI	AGCT	2 cut(s)	313, 450
AlwI	GGATC	2 cut(s)	351, 364
ApeKI	GCWGC	2 cut(s)	310, 363
ApoI	RAATTY	3 cut(s)	282, 374, 436
AspLEI	GCGC	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	322, 350
BccI	CCATC	4 cut(s)	80, 152, 174, 175
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	1 cut(s)	154
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	2 cut(s)	311, 364
BlsI	GCNGC	2 cut(s)	312, 365
Bme1390I	CCNGG	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	151, 358
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	85, 163
BseMI	GCAATG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	322, 350
BsiSI	CCGG	2 cut(s)	33, 360
Bsp143I	GATC	2 cut(s)	142, 356
BspACI	CCGC	2 cut(s)	192, 226
BspLI	GGNNCC	2 cut(s)	151, 358
BspPI	GGATC	2 cut(s)	351, 364
BspQI	GCTCTTC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	142, 356
Bst2UI	CCWGG	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	235
BstC8I	GCNNGC	3 cut(s)	6, 34, 368
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	85, 163
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	145, 359
BstMBI	GATC	2 cut(s)	142, 356
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	2 cut(s)	95, 370
BstSCI	CCNGG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	322, 350
BstX2I	RGATCY	2 cut(s)	142, 356
BstYI	RGATCY	2 cut(s)	142, 356
BtsCI	GGATG	2 cut(s)	85, 163
Cac8I	GCNNGC	3 cut(s)	6, 34, 368
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	32
CviAII	CATG	4 cut(s)	92, 367, 395, 457
CviJI	RGCY	8 cut(s)	53, 67, 239, 256, 313, 363, 404, 450
CviKI_1	RGCY	8 cut(s)	53, 67, 239, 256, 313, 363, 404, 450
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	2 cut(s)	144, 358
DpnII	GATC	2 cut(s)	142, 356
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	331
FaeI	CATG	4 cut(s)	95, 370, 398, 460
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FatI	CATG	4 cut(s)	91, 366, 394, 456
Fnu4HI	GCNGC	2 cut(s)	311, 364
FokI	GGATG	2 cut(s)	92, 170
Fsp4HI	GCNGC	2 cut(s)	311, 364
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	2 cut(s)	311, 364
HapII	CCGG	2 cut(s)	33, 360
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	4 cut(s)	95, 370, 398, 460
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HpaII	CCGG	2 cut(s)	33, 360
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	100, 140
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	310, 329, 366
HpyF3I	CTNAG	1 cut(s)	56
Hsp92II	CATG	4 cut(s)	95, 370, 398, 460
HspAI	GCGC	1 cut(s)	8
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	142, 356
LguI	GCTCTTC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	9 cut(s)	46, 85, 108, 131, 139, 156, 166, 221, 373
Lsp1109I	GCAGC	2 cut(s)	322, 350
LweI	GCATC	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	348, 421
MalI	GATC	2 cut(s)	144, 358
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	2 cut(s)	142, 356
MboII	GAAGA	2 cut(s)	222, 279
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	2 cut(s)	142, 356
MluCI	AATT	6 cut(s)	14, 213, 282, 374, 412, 436
MnlI	CCTC	2 cut(s)	43, 255
Mph1103I	ATGCAT	1 cut(s)	331
MroNI	GCCGGC	1 cut(s)	32
MseI	TTAA	2 cut(s)	441, 469
MspI	CCGG	2 cut(s)	33, 360
MspR9I	CCNGG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	154
NaeI	GCCGGC	1 cut(s)	34
NdeII	GATC	2 cut(s)	142, 356
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	4 cut(s)	95, 370, 398, 460
NlaIV	GGNNCC	2 cut(s)	151, 358
NmuCI	GTSAC	1 cut(s)	421
NsbI	TGCGCA	1 cut(s)	9
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	2 cut(s)	95, 370
PaeI	GCATGC	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	235
PdiI	GCCGGC	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	312, 365
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	151, 358
PsuI	RGATCY	2 cut(s)	142, 356
SapI	GCTCTTC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	441, 469
SatI	GCNGC	2 cut(s)	311, 364
Sau3AI	GATC	2 cut(s)	142, 356
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	3 cut(s)	155, 315, 452
SfaNI	GCATC	1 cut(s)	70
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	6 cut(s)	14, 213, 282, 374, 412, 436
SsiI	CCGC	2 cut(s)	192, 226
StyD4I	CCNGG	1 cut(s)	152
TasI	AATT	6 cut(s)	14, 213, 282, 374, 412, 436
Tru1I	TTAA	2 cut(s)	441, 469
Tru9I	TTAA	2 cut(s)	441, 469
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	310, 363
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	54, 218
XapI	RAATTY	3 cut(s)	282, 374, 436
XceI	RCATGY	2 cut(s)	95, 370
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.