Rh1BG149300

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000989
Physical Location & Seq
Reverse (-)
24364801 .. 24365282
482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG149300.1

Sequence Viewer

Length: 315 bp
ATGGTGATGGAGATGATGTGCTGCTTCAAGATGTGGGAACTTGGGATCCATTTACATCTTCTGATGAAAAAGAGAGAAGCAGTCAAAAAATACTGCTCTTCTGCAAGGACAAGAGACCTTATGTCTGAAACCCTGTCTCAAACACTTCCTTCAAGTTCTGGAAGTAAGGAAGAAGAGAAGCTTGAAATTGCGACTACTGGAAGCAGAGAAGAAGACATACCCAAAAGTAGTGCAGAAGAGTACTGTATTAAGAGGTTTACATTTTTTATTTATACACAGGTTTATAAATGTACAAGAAATAGGTTCATGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

104

Amino Acids

12.26

Weight (kDa)

8.62

Isoelectric Point (pI)

54.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AclWI GGATC 2 cut(s) 40, 53
AfaI GTAC 2 cut(s) 242, 292
AgsI TTSAA 3 cut(s) 28, 153, 185
AhdI GACNNNNNGTC 1 cut(s) 121
AloI GAACNNNNNNTCC 2 cut(s) 30, 62
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw26I GTCTC 2 cut(s) 108, 141
AlwI GGATC 2 cut(s) 40, 53
ApeKI GCWGC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 16
BamHI GGATCC 1 cut(s) 45
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 8
BcoDI GTCTC 2 cut(s) 108, 141
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
BmcAI AGTACT 1 cut(s) 242
BmeRI GACNNNNNGTC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 108
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 252
BsmAI GTCTC 2 cut(s) 108, 141
Bso31I GGTCTC 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 290
Bsp143I GATC 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 47
BspPI GGATC 2 cut(s) 40, 53
BspQI GCTCTTC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 108
BsrGI TGTACA 1 cut(s) 290
BsrI ACTGG 1 cut(s) 202
BssMI GATC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 3 cut(s) 103, 168, 231
BstAUI TGTACA 1 cut(s) 290
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 2 cut(s) 108, 141
BstMBI GATC 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
Csp6I GTAC 2 cut(s) 241, 291
CviAII CATG 1 cut(s) 307
CviJI RGCY 1 cut(s) 181
CviKI_1 RGCY 1 cut(s) 181
CviQI GTAC 2 cut(s) 241, 291
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DriI GACNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 3 cut(s) 103, 168, 231
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 3 cut(s) 103, 168, 231
Eco31I GGTCTC 1 cut(s) 108
FaeI CATG 1 cut(s) 310
FaiI YATR 5 cut(s) 122, 218, 273, 285, 308
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 22
Hin1II CATG 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 179
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 2 cut(s) 63, 127
Hpy188III TCNNGA 2 cut(s) 28, 159
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 104, 233
Hsp92II CATG 1 cut(s) 310
Kzo9I GATC 1 cut(s) 45
LguI GCTCTTC 1 cut(s) 103
LpnPI CCDG 4 cut(s) 144, 146, 183, 263
Lsp1109I GCAGC 1 cut(s) 8
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 7 cut(s) 50, 90, 182, 185, 221, 224, 248
MflI RGATCY 1 cut(s) 45
MluCI AATT 1 cut(s) 186
MnlI CCTC 1 cut(s) 246
MseI TTAA 1 cut(s) 249
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 23
PsiI TTATAA 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 2 cut(s) 242, 292
RsaNI GTAC 2 cut(s) 241, 291
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 1 cut(s) 45
ScaI AGTACT 1 cut(s) 242
SetI ASST 5 cut(s) 120, 183, 257, 282, 305
Sse9I AATT 1 cut(s) 186
TaaI ACNGT 1 cut(s) 245
TasI AATT 1 cut(s) 186
TatI WGTACW 2 cut(s) 240, 290
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 80, 295
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.