Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001106

Physical Location & Seq

Genomic Coordinates Forward (+)

28811040 .. 28811721

Gene Structure 682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTTCCAAATCTAGTTTCATGGCTACCTTCAACATTGTGACTCTCATGCTCATGGTGGCTTCCTCCACAGTGACAGCTCGCCCTCTCATGAAACCATCCATGGGGACGTCTTCTCCTACCACAAGCCTTGTGTACAGGCTCAAGCTTGATGAAGATACAGGGTACTGCTGGGACTCACTGATGCAGCTCCAACACTGTTCTGGAGAGCTGATCTTGTTCTTCCTCAACGGTGAGACTTACATTGGCCCTGGGTGTTGCAGTGCTATAAGAACCATTGGACGCAAGTGTTGGCCTACTATGATTGGTGTTCTTGGTTTTACTGCTCAAGAAGGTGATATGCTCCAAGGTTACTGTGATGGCAATGACTCTGACAACAATGGTGAAGACCATGCTCTTGCCTCCTCAACACTGCCTCTCTCCGTGAATTTCAAGACTACCGTTGTTAGATCTTCTGCTTCTCCTTCTAACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0019953 GO:0021700 GO:0022412 GO:0022414 GO:0030154 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032880 GO:0043226 GO:0043227 GO:0043900 GO:0044464 GO:0044703 GO:0048232 GO:0048240 GO:0048468 GO:0048469 GO:0048515 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0051704 GO:0060341 GO:0065007 GO:0080154 GO:0080155 GO:1903827 GO:2000008 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prolamin_like

Protein Analysis

158

Amino Acids

17.0

Weight (kDa)

5.2

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	57 - 120	6.9e-19	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76750
fragaria_vesca	FvH4_2g13390 FvH4_2g13400 FvH4_2g18700 FvH4_2g18870 FvH4_2g18880 FvH4_2g18910 FvH4_5g02500
malus_domestica	MD10G1029400.v1.1
prunus_persica	Prupe.8G031900_v2.0.a1 Prupe.8G032300_v2.0.a1 Prupe.8G034300_v2.0.a1 Prupe.8G034800_v2.0.a1 Prupe.8G053400_v2.0.a1 Prupe.I003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0274951 RchiOBHm_Chr6g0284691 RchiOBHm_Chr6g0284701 RchiOBHm_Chr7g0197601
rosa_laevigata	RLG00000003923 RLG00000012730 RLG00000012731 RLG00000013506
rosa_multiflora	Rmu_co8247145.1_g000001 Rmu_sc0007474.1_g000008 Rmu_sc0007474.1_g000014 Rmu_sc0007474.1_g000019 Rmu_sc0009490.1_g000002
rosa_roxburghii	Rroxscaffold_7G00184470 Rroxscaffold_7G00184480
rosa_rugosa	Rorug06G0086700 Rorug06G0165500 Rorug06G0165600 Rorug07G0041800.1
rosa_samantha	Rh6AG201400 Rh6AG278500 Rh6AG278600 Rh6AG278700 Rh6BG205000 Rh6BG278400 Rh6BG278500 Rh6BG278800 Rh6CG206400 Rh6CG280800 Rh6CG281000 Rh6CG281100 Rh6DG196500 Rh6DG273500 Rh6DG273600 Rh6DG273700 Rh7AG166200 Rh7BG168300 Rh7CG174600 Rh7DG167900
rosa_wichuraiana	Rw6G017520 Rw6G023930 Rw6G023950 Rw6G023960 Rw7G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	427
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	2 cut(s)	137, 167
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	34, 433
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	4 cut(s)	80, 148, 190, 211
AluI	AGCT	4 cut(s)	80, 148, 190, 211
Alw26I	GTCTC	1 cut(s)	230
AoxI	GGCC	2 cut(s)	247, 293
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	3 cut(s)	245, 347, 395
BbsI	GAAGAC	2 cut(s)	105, 393
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	2 cut(s)	106, 353
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	15
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	2 cut(s)	105, 393
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	128, 312
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	102, 250, 251, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	4 cut(s)	102, 250, 251, 346
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	171
BshFI	GGCC	2 cut(s)	249, 295
BslFI	GGGAC	2 cut(s)	121, 188
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	2 cut(s)	121, 188
BsnI	GGCC	2 cut(s)	249, 295
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	213, 449
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	2 cut(s)	249, 295
BspHI	TCATGA	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	135
BssECI	CCNNGG	4 cut(s)	102, 250, 251, 346
BssMI	GATC	2 cut(s)	213, 449
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	2 cut(s)	102, 346
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	5 cut(s)	73, 200, 233, 356, 442
BstACI	GRCGYC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	98
BstKTI	GATC	2 cut(s)	216, 452
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	2 cut(s)	213, 449
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	105, 393
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	249, 295
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	98
BtsI	GCAGTG	2 cut(s)	268, 410
BtsIMutI	CAGTG	5 cut(s)	78, 179, 196, 268, 410
Cac8I	GCNNGC	1 cut(s)	82
CciI	TCATGA	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	136, 166
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	6 cut(s)	22, 49, 55, 91, 103, 392
CviQI	GTAC	2 cut(s)	136, 166
DpnI	GATC	2 cut(s)	215, 451
DpnII	GATC	2 cut(s)	213, 449
Eco130I	CCWWGG	2 cut(s)	102, 346
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	102, 346
ErhI	CCWWGG	2 cut(s)	102, 346
FaeI	CATG	6 cut(s)	25, 52, 58, 94, 106, 395
FaiI	YATR	9 cut(s)	23, 50, 56, 92, 104, 269, 302, 341, 393
FaqI	GGGAC	2 cut(s)	121, 188
FatI	CATG	6 cut(s)	21, 48, 54, 90, 102, 391
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	1 cut(s)	188
GsaI	CCCAGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	249, 295
HgaI	GACGC	1 cut(s)	291
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	6 cut(s)	25, 52, 58, 94, 106, 395
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	3 cut(s)	43, 176, 368
HphI	GGTGA	3 cut(s)	245, 347, 395
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	4 cut(s)	91, 204, 329, 433
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	40, 326, 474
HpyCH4III	ACNGT	5 cut(s)	73, 200, 233, 356, 442
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	187, 261
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	6 cut(s)	25, 52, 58, 94, 106, 395
Kzo9I	GATC	2 cut(s)	213, 449
LmnI	GCTCC	2 cut(s)	195, 348
LpnPI	CCDG	6 cut(s)	124, 147, 157, 189, 237, 264
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	3 cut(s)	40, 73, 350
MalI	GATC	2 cut(s)	215, 451
MboI	GATC	2 cut(s)	213, 449
MboII	GAAGA	5 cut(s)	105, 167, 214, 398, 444
MflI	RGATCY	1 cut(s)	449
MluCI	AATT	1 cut(s)	427
MlyI	GAGTC	3 cut(s)	37, 170, 362
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	6 cut(s)	76, 96, 236, 412, 415, 426
MslI	CAYNNNNRTG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	213, 449
NlaIII	CATG	6 cut(s)	25, 52, 58, 94, 106, 395
NmuCI	GTSAC	2 cut(s)	40, 73
PagI	TCATGA	1 cut(s)	90
PasI	CCCWGGG	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	3 cut(s)	37, 170, 362
PpsI	GAGTC	3 cut(s)	37, 170, 362
Psp6I	CCWGG	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	449
RsaI	GTAC	2 cut(s)	137, 167
RsaNI	GTAC	2 cut(s)	136, 166
RseI	CAYNNNNRTG	1 cut(s)	53
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	213, 449
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	3 cut(s)	37, 170, 362
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	8 cut(s)	32, 82, 113, 150, 192, 213, 337, 352
SfaNI	GCATC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	143, 327
SmoI	CTYRAG	2 cut(s)	143, 327
Sse9I	AATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	2 cut(s)	102, 346
TaaI	ACNGT	5 cut(s)	73, 200, 233, 356, 442
TaiI	ACGT	1 cut(s)	113
TasI	AATT	1 cut(s)	427
TatI	WGTACW	1 cut(s)	135
TscAI	CASTG	5 cut(s)	78, 186, 203, 268, 417
TseFI	GTSAC	2 cut(s)	40, 73
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	2 cut(s)	40, 73
TspDTI	ATGAA	3 cut(s)	10, 107, 168
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	5 cut(s)	78, 186, 203, 268, 417
XapI	RAATTY	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XspI	CTAG	1 cut(s)	15
ZraI	GACGTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.