Rroxscaffold_7G00184480

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001106
Physical Location & Seq
Reverse (-)
23671263 .. 23674028
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184480.1

Sequence Viewer

Length: 1107 bp
ATGGCTTACACATCTAATCTTTTCCTTCTCACAGCTCTGCTTGTTCTGACCATGTCATTTGTGGTCAGTACTTCTCGATCATCGAATTACCCAACTGGGAGAAAATCAAACATTGTAGCCAGATTGAACTTGGATGAAGAATCATCAACCTGCTGGGAGTCTTTATTTCAGCTCCAGGCATGCAGTAAAGAGGTTGTCTTGTTCTTCCTCAATGGTGAGACTTACTTAGGAGACGGCTGTTGCAAAGCCATTAGAACCATTGAGCACCAGTGTTGGCCAGCCTTGCTCGGGTCCCTAGGGCTTACCACGGAAGAGACTGATATACTAAAGGGTTACTGCGATGAAGCTGATCAAATCCAATCACCTCCGACATCGCCTTCACCACCATCTGTTCATCAGCCTACTGGAAAACTTGTTCCGGATCTGGACAATGGTTTCCCGCTTCATTGGCTTATGGCGTCTTCATGTGTTCCTGGTCTTAATCTTCCATCGGGTTTTAAGTTTCTTCCAACCAACGAAGAACTATTGGGATATTATCTTCTGAACAAGGTCCGCGGCAAACCATTCAAGTATGACTCTAGGGTTATGAATGAGTTCAATCTTTACAAGACGGAACCCTGGGATCTTTGGACTAGGTTTGGCGGCCCAAGACTGAACCAGGGTGAAGACCTCTTTATCTTTACCAAATTGAAGAAGGTGAATGATAATGGATCAAACGTGTCTCGCACGGCAGGTTCTGGCACCTGGAAAGGTGACACTGCAGGGGCCAAAGTATATGATTCAGAGGATAAGAAGAAGATCTTAGGATCGTGGAAAAGGTTTCATTACGTGCCGAATGAACCAAATGAGAATGGTTCTTGGATTATGTTCGAATACAAGCTTGATGATTCACTGATCCCCAAATCTTGTAGTGGTCGTGATCTTGTGCTGTGCAGGATTAGGAAAGACCGAAAGAGAAAGTTTATTGAAGATCAGATGAATGACACTCCTCAGTCCTCCCGTAGAAAGGTTCCAAGGGTAGACAAACATGATGTCATGTCTACTCATGGGAAACATATTATGAATGATGATACTAATCTGCCGGCTTCTTTTACTCTCAAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

368

Amino Acids

41.57

Weight (kDa)

8.26

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 50 - 114 2e-17 Prolamin-like
NAM PF02365 163 - 294 3.5e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 158, 722
AccB1I GGYRCC 1 cut(s) 740
AccI GTMKAC 2 cut(s) 1020, 1040
AccII CGCG 1 cut(s) 555
AccIII TCCGGA 1 cut(s) 418
AciI CCGC 4 cut(s) 440, 553, 555, 642
AclWI GGATC 5 cut(s) 429, 630, 718, 814, 889
AcoI YGGCCR 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 458
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 288, 1006
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 5 cut(s) 127, 568, 598, 691, 968
AjnI CCWGG 5 cut(s) 174, 472, 617, 657, 743
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
AluBI AGCT 4 cut(s) 35, 172, 347, 880
AluI AGCT 4 cut(s) 35, 172, 347, 880
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 4 cut(s) 212, 225, 308, 726
AlwI GGATC 5 cut(s) 429, 630, 718, 814, 889
AlwNI CAGNNNCTG 1 cut(s) 737
Ama87I CYCGRG 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 418
AoxI GGCC 3 cut(s) 275, 643, 765
ArsI GACNNNNNNTTYG 2 cut(s) 1017, 1049
Asp700I GAANNNNTTC 1 cut(s) 593
AspA2I CCTAGG 1 cut(s) 295
AspS9I GGNCC 4 cut(s) 291, 550, 644, 765
AsuHPI GGTGA 6 cut(s) 227, 354, 372, 674, 709, 764
AsuII TTCGAA 1 cut(s) 870
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 2 cut(s) 291, 550
AvrII CCTAGG 1 cut(s) 295
BalI TGGCCA 1 cut(s) 277
BanI GGYRCC 1 cut(s) 740
BbsI GAAGAC 2 cut(s) 453, 672
Bbv12I GWGCWC 1 cut(s) 267
BccI CCATC 2 cut(s) 394, 496
BceAI ACGGC 2 cut(s) 250, 744
BciT130I CCWGG 5 cut(s) 176, 474, 619, 659, 745
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 4 cut(s) 212, 225, 308, 726
BfaI CTAG 3 cut(s) 296, 579, 633
BfmI CTRYAG 1 cut(s) 759
BfuAI ACCTGC 2 cut(s) 158, 722
BglII AGATCT 1 cut(s) 798
BisI GCNGC 2 cut(s) 556, 643
BlnI CCTAGG 1 cut(s) 295
BlsI GCNGC 2 cut(s) 557, 644
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 5 cut(s) 176, 474, 619, 659, 745
Bme18I GGWCC 2 cut(s) 291, 550
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 4 cut(s) 291, 550, 644, 765
BmiI GGNNCC 6 cut(s) 292, 293, 615, 742, 766, 1011
BmrFI CCNGG 5 cut(s) 176, 474, 619, 659, 745
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
BpiI GAAGAC 2 cut(s) 453, 672
BpmI CTGGAG 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 870
BpuEI CTTGAG 1 cut(s) 1082
BsaAI YACGTR 1 cut(s) 829
BsaBI GATNNNNATC 1 cut(s) 1074
BsaHI GRCGYC 1 cut(s) 458
BsaJI CCNNGG 7 cut(s) 295, 306, 553, 617, 618, 658, 1013
BsaWI WCCGGW 1 cut(s) 418
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 1006
Bse118I RCCGGY 1 cut(s) 1081
Bse1I ACTGG 3 cut(s) 100, 268, 409
Bse8I GATNNNNATC 1 cut(s) 1074
BseAI TCCGGA 1 cut(s) 418
BseBI CCWGG 5 cut(s) 176, 474, 619, 659, 745
BseDI CCNNGG 7 cut(s) 295, 306, 553, 617, 618, 658, 1013
BseGI GGATG 1 cut(s) 139
BseJI GATNNNNATC 1 cut(s) 1074
BseLI CCNNNNNNNGG 2 cut(s) 288, 1006
BseMII CTCAG 1 cut(s) 1004
BseNI ACTGG 3 cut(s) 100, 268, 409
BseRI GAGGAG 1 cut(s) 978
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 952
Bsh1236I CGCG 1 cut(s) 555
BshFI GGCC 3 cut(s) 277, 645, 767
BshNI GGYRCC 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 2 cut(s) 419, 1082
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 2 cut(s) 288, 1006
BsmAI GTCTC 4 cut(s) 212, 225, 308, 726
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 3 cut(s) 277, 645, 767
BsoBI CYCGRG 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 870
Bsp1286I GDGCHC 1 cut(s) 267
Bsp13I TCCGGA 1 cut(s) 418
BspACI CCGC 4 cut(s) 440, 553, 555, 642
BspANI GGCC 3 cut(s) 277, 645, 767
BspCNI CTCAG 1 cut(s) 1003
BspEI TCCGGA 1 cut(s) 418
BspFNI CGCG 1 cut(s) 555
BspLI GGNNCC 6 cut(s) 292, 293, 615, 742, 766, 1011
BspMAI CTGCAG 1 cut(s) 763
BspMI ACCTGC 2 cut(s) 158, 722
BspPI GGATC 5 cut(s) 429, 630, 718, 814, 889
BspT104I TTCGAA 1 cut(s) 870
BspT107I GGYRCC 1 cut(s) 740
BsrFI RCCGGY 1 cut(s) 1081
BsrI ACTGG 3 cut(s) 100, 268, 409
BssAI RCCGGY 1 cut(s) 1081
BssECI CCNNGG 7 cut(s) 295, 306, 553, 617, 618, 658, 1013
BssNI GRCGYC 1 cut(s) 458
BssT1I CCWWGG 2 cut(s) 295, 1013
Bst2UI CCWGG 5 cut(s) 176, 474, 619, 659, 745
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 829
BstBI TTCGAA 1 cut(s) 870
BstC8I GCNNGC 3 cut(s) 181, 279, 1083
BstDEI CTNAG 4 cut(s) 226, 802, 990, 1104
BstDSI CCRYGG 2 cut(s) 306, 553
BstF5I GGATG 1 cut(s) 139
BstFNI CGCG 1 cut(s) 555
BstMAI GTCTC 4 cut(s) 212, 225, 308, 726
BstMWI GCNNNNNNNGC 2 cut(s) 283, 448
BstNI CCWGG 5 cut(s) 176, 474, 619, 659, 745
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 5 cut(s) 174, 472, 617, 657, 743
BstSFI CTRYAG 1 cut(s) 759
BstUI CGCG 1 cut(s) 555
BstV2I GAAGAC 2 cut(s) 453, 672
BstX2I RGATCY 3 cut(s) 421, 622, 798
BstYI RGATCY 3 cut(s) 421, 622, 798
BsuRI GGCC 3 cut(s) 277, 645, 767
BtgI CCRYGG 2 cut(s) 306, 553
BtgZI GCGATG 2 cut(s) 354, 357
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 3 cut(s) 275, 756, 890
BveI ACCTGC 2 cut(s) 158, 722
Cac8I GCNNGC 3 cut(s) 181, 279, 1083
CaiI CAGNNNCTG 1 cut(s) 737
Cfr10I RCCGGY 1 cut(s) 1081
Cfr13I GGNCC 4 cut(s) 291, 550, 644, 765
Cfr42I CCGCGG 1 cut(s) 556
CseI GACGC 1 cut(s) 447
Csp6I GTAC 1 cut(s) 69
CviAII CATG 6 cut(s) 52, 180, 465, 1028, 1036, 1046
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 4 cut(s) 226, 802, 990, 1104
EaeI YGGCCR 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 2 cut(s) 295, 1013
Eco47I GGWCC 2 cut(s) 291, 550
Eco88I CYCGRG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 291
EcoRII CCWGG 5 cut(s) 174, 472, 617, 657, 743
EcoT14I CCWWGG 2 cut(s) 295, 1013
ErhI CCWWGG 2 cut(s) 295, 1013
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 6 cut(s) 55, 183, 468, 1031, 1039, 1049
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FaqI GGGAC 1 cut(s) 277
FatI CATG 6 cut(s) 51, 179, 464, 1027, 1035, 1045
FauI CCCGC 1 cut(s) 447
FbaI TGATCA 1 cut(s) 349
FblI GTMKAC 2 cut(s) 1020, 1040
Fnu4HI GCNGC 2 cut(s) 556, 643
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 556, 643
FspBI CTAG 3 cut(s) 296, 579, 633
GluI GCNGC 2 cut(s) 556, 643
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 3 cut(s) 277, 645, 767
HapII CCGG 2 cut(s) 419, 1082
HgaI GACGC 1 cut(s) 447
Hin1I GRCGYC 1 cut(s) 458
Hin1II CATG 6 cut(s) 55, 183, 468, 1031, 1039, 1049
HindIII AAGCTT 1 cut(s) 878
HinfI GANTC 5 cut(s) 140, 158, 575, 779, 887
HpaII CCGG 2 cut(s) 419, 1082
HphI GGTGA 6 cut(s) 227, 354, 372, 674, 709, 764
Hpy166II GTNNAC 2 cut(s) 1021, 1041
Hpy188I TCNGA 5 cut(s) 48, 369, 543, 784, 975
Hpy188III TCNNGA 4 cut(s) 75, 419, 425, 917
Hpy8I GTNNAC 2 cut(s) 1021, 1041
HpyAV CCTTC 3 cut(s) 35, 387, 688
HpyCH4IV ACGT 2 cut(s) 717, 828
HpyCH4V TGCA 4 cut(s) 183, 243, 761, 933
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 448
HpyF3I CTNAG 4 cut(s) 226, 802, 990, 1104
HpySE526I ACGT 2 cut(s) 717, 828
Hsp92I GRCGYC 1 cut(s) 458
Hsp92II CATG 6 cut(s) 55, 183, 468, 1031, 1039, 1049
KflI GGGWCCC 1 cut(s) 291
Kpn2I TCCGGA 1 cut(s) 418
KroI GCCGGC 1 cut(s) 1081
KroNI GCCGGC 1 cut(s) 1083
Ksp22I TGATCA 1 cut(s) 349
KspI CCGCGG 1 cut(s) 556
LmnI GCTCC 1 cut(s) 177
MaeI CTAG 3 cut(s) 296, 579, 633
MaeII ACGT 2 cut(s) 717, 828
MaeIII GTNAC 2 cut(s) 332, 752
MflI RGATCY 3 cut(s) 421, 622, 798
MhlI GDGCHC 1 cut(s) 267
MlsI TGGCCA 1 cut(s) 277
MluCI AATT 2 cut(s) 85, 686
MluNI TGGCCA 1 cut(s) 277
MlyI GAGTC 2 cut(s) 167, 569
MmeI TCCRAC 2 cut(s) 392, 533
MnlI CCTC 7 cut(s) 184, 218, 375, 680, 778, 999, 1006
Mox20I TGGCCA 1 cut(s) 277
MroI TCCGGA 1 cut(s) 418
MroNI GCCGGC 1 cut(s) 1081
MroXI GAANNNNTTC 1 cut(s) 593
MscI TGGCCA 1 cut(s) 277
MseI TTAA 2 cut(s) 480, 498
Msp20I TGGCCA 1 cut(s) 277
MspA1I CMGCKG 1 cut(s) 555
MspI CCGG 2 cut(s) 419, 1082
MspR9I CCNGG 5 cut(s) 176, 474, 619, 659, 745
MvaI CCWGG 5 cut(s) 176, 474, 619, 659, 745
MvnI CGCG 1 cut(s) 555
MwoI GCNNNNNNNGC 2 cut(s) 283, 448
NaeI GCCGGC 1 cut(s) 1083
NgoMIV GCCGGC 1 cut(s) 1081
NlaIII CATG 6 cut(s) 55, 183, 468, 1031, 1039, 1049
NlaIV GGNNCC 6 cut(s) 292, 293, 615, 742, 766, 1011
NmuCI GTSAC 1 cut(s) 752
NspI RCATGY 1 cut(s) 183
NspV TTCGAA 1 cut(s) 870
PaeI GCATGC 1 cut(s) 183
PasI CCCWGGG 1 cut(s) 618
PdiI GCCGGC 1 cut(s) 1083
PdmI GAANNNNTTC 1 cut(s) 593
PfeI GAWTC 3 cut(s) 140, 779, 887
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 557, 644
PleI GAGTC 2 cut(s) 166, 569
PpsI GAGTC 2 cut(s) 166, 569
Ppu21I YACGTR 1 cut(s) 829
PpuMI RGGWCCY 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 291
Psp6I CCWGG 5 cut(s) 174, 472, 617, 657, 743
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 5 cut(s) 174, 472, 617, 657, 743
PspN4I GGNNCC 6 cut(s) 292, 293, 615, 742, 766, 1011
PspPI GGNCC 4 cut(s) 291, 550, 644, 765
PspPPI RGGWCCY 1 cut(s) 291
PstI CTGCAG 1 cut(s) 763
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 3 cut(s) 421, 622, 798
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SacII CCGCGG 1 cut(s) 556
SaqAI TTAA 2 cut(s) 480, 498
SatI GCNGC 2 cut(s) 556, 643
Sau96I GGNCC 4 cut(s) 291, 550, 644, 765
ScaI AGTACT 1 cut(s) 70
SchI GAGTC 2 cut(s) 167, 569
ScrFI CCNGG 5 cut(s) 176, 474, 619, 659, 745
SduI GDGCHC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 759
Sfr303I CCGCGG 1 cut(s) 556
SfuI TTCGAA 1 cut(s) 870
SgrBI CCGCGG 1 cut(s) 556
SinI GGWCC 2 cut(s) 291, 550
SmlI CTYRAG 1 cut(s) 1097
SmoI CTYRAG 1 cut(s) 1097
SphI GCATGC 1 cut(s) 183
Sse9I AATT 2 cut(s) 85, 686
SsiI CCGC 4 cut(s) 440, 553, 555, 642
SspMI CTAG 3 cut(s) 296, 579, 633
StyD4I CCNGG 5 cut(s) 174, 472, 617, 657, 743
StyI CCWWGG 2 cut(s) 295, 1013
TaiI ACGT 2 cut(s) 720, 831
TaqI TCGA 3 cut(s) 76, 83, 870
TaqII GACCGA 1 cut(s) 963
TasI AATT 2 cut(s) 85, 686
TatI WGTACW 1 cut(s) 68
TauI GCSGC 2 cut(s) 558, 645
TfiI GAWTC 3 cut(s) 140, 779, 887
Tru1I TTAA 2 cut(s) 480, 498
Tru9I TTAA 2 cut(s) 480, 498
TscAI CASTG 3 cut(s) 275, 763, 897
TseFI GTSAC 1 cut(s) 752
Tsp45I GTSAC 1 cut(s) 752
TspGWI ACGGA 2 cut(s) 323, 626
TspRI CASTG 3 cut(s) 275, 763, 897
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 291, 550
XceI RCATGY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 2 cut(s) 58, 127
XmaJI CCTAGG 1 cut(s) 295
XmiI GTMKAC 2 cut(s) 1020, 1040
XmnI GAANNNNTTC 1 cut(s) 593
XspI CTAG 3 cut(s) 296, 579, 633
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.