Rorug06G0086700

Egg cell-secreted protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
11609806 .. 11609991
186 bp
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UTR
Exon/CDS
Intron
Rorug06G0086700.1

Sequence Viewer

Length: 186 bp
ATGGCTAACGCTATTGCCAGTCTTGTTGCTGCCTTCTCCCATTCTGAGGCTCCTCGTATCGATCTAGGGTTCGCTGGAGCTGTTGTGCCGCAAGAAGATTATCATTATATAGTGGATTGTCTTCTCACCCACGAACTTAAGGTTGCGGGCTTCACAGGTACAATTCTATCCATTTGGAGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

61

Amino Acids

6.62

Weight (kDa)

5.3

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 89, 146
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 46, 177
AflII CTTAAG 1 cut(s) 137
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 16
BfaI CTAG 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 137
BisI GCNGC 2 cut(s) 30, 89
BlsI GCNGC 2 cut(s) 31, 90
BmiI GGNNCC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 177
Bse1I ACTGG 1 cut(s) 18
BseCI ATCGAT 1 cut(s) 60
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 46, 177
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 46, 177
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 2 cut(s) 89, 146
BspCNI CTCAG 1 cut(s) 37
BspDI ATCGAT 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 51
BspTI CTTAAG 1 cut(s) 137
BsrI ACTGG 1 cut(s) 18
BssMI GATC 1 cut(s) 61
BstAFI CTTAAG 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 113
Bsu15I ATCGAT 1 cut(s) 60
BsuTUI ATCGAT 1 cut(s) 60
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 60
Csp6I GTAC 1 cut(s) 159
CviJI RGCY 4 cut(s) 5, 50, 80, 150
CviKI_1 RGCY 4 cut(s) 5, 50, 80, 150
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
FaiI YATR 2 cut(s) 108, 110
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 30, 89
Fsp4HI GCNGC 2 cut(s) 30, 89
FspBI CTAG 1 cut(s) 65
GluI GCNGC 2 cut(s) 30, 89
GsuI CTGGAG 1 cut(s) 96
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 45
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 2 cut(s) 55, 77
LpnPI CCDG 3 cut(s) 31, 60, 141
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 1 cut(s) 65
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 2 cut(s) 107, 113
MluCI AATT 1 cut(s) 162
MnlI CCTC 3 cut(s) 40, 63, 171
MseI TTAA 1 cut(s) 138
MspCI CTTAAG 1 cut(s) 137
NdeII GATC 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 51
PkrI GCNGC 2 cut(s) 31, 90
PspN4I GGNNCC 1 cut(s) 51
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 30, 89
Sau3AI GATC 1 cut(s) 61
SetI ASST 3 cut(s) 82, 144, 160
SgeI CNNG 9 cut(s) 30, 35, 66, 77, 87, 104, 143, 159, 168
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 1 cut(s) 162
SsiI CCGC 2 cut(s) 89, 146
SspMI CTAG 1 cut(s) 65
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 162
TauI GCSGC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 1 cut(s) 29
Vha464I CTTAAG 1 cut(s) 137
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.