RchiOBHm_Chr6g0274951

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001106
Physical Location & Seq
Forward (+)
36543177 .. 36543854
678 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24668

Sequence Viewer

Length: 561 bp
ATGCACGTAACGCTTTCGCATCTCCATCACTACTTAAACCCTCGCTTCTCCTCTGTCCCTTCACACATGACACATTATCTCCTGAATAACAGAATCACAATGGCCTTTAACACTTCCAATCTCTTCCTAACTCTCACTGCTCTCATTGCCCTAACCATGCCGTTCATGGCTTCTGCTTATCGACCCTTGGTGACGAATGACCCAACCGGATCAGATCCAAGCCTGGCAGCTAGGTTGAATTTGGATGGAGAATCCTCCAACTGCTGGGATTCCTTGCTTCAGCTCCAGTCATGTAGCGGTGAGGCTATAATGTTTTTCTTGAATGGCCAGACTTCTTTGGGTGATGGATGTTGTGAAGCTATTCGGGTAATCGAGCACCAGTGCTGGCCTGCCTTGCTCGGCGCGCTAGGGTTTACCACGGAAGAGACTGATATTCTCAAAGGTTATTGCGACGAGGCTGAACAAACTCATCATTCTCCTCCGTCGATACCATCACCACCGTACCTTCTTCATCCTAATAGAGCAGTTCATGTTCCTTATCAGGCTGATATGGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

186

Amino Acids

20.52

Weight (kDa)

5.52

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 87 - 151 6.8e-17 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 264
AccII CGCG 1 cut(s) 404
AciI CCGC 1 cut(s) 297
AclWI GGATC 2 cut(s) 209, 217
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 2 cut(s) 238, 322
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 3 cut(s) 230, 283, 359
AluI AGCT 3 cut(s) 230, 283, 359
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 2 cut(s) 209, 217
AoxI GGCC 3 cut(s) 102, 325, 386
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 2 cut(s) 404, 406
AsuHPI GGTGA 4 cut(s) 202, 311, 353, 486
BaeI ACNNNNGTAYC 2 cut(s) 485, 518
BalI TGGCCA 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 239
BccI CCATC 4 cut(s) 33, 239, 338, 499
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 2 cut(s) 231, 407
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 186, 417
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 264
Bse1I ACTGG 2 cut(s) 286, 379
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 2 cut(s) 186, 417
BseGI GGATG 3 cut(s) 250, 353, 511
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 144
BseNI ACTGG 2 cut(s) 286, 379
BsePI GCGCGC 1 cut(s) 402
BseRI GAGGAG 2 cut(s) 40, 468
BseXI GCAGC 1 cut(s) 239
BseYI CCCAGC 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 3 cut(s) 104, 327, 388
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 3 cut(s) 104, 327, 388
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 2 cut(s) 209, 214
BspACI CCGC 1 cut(s) 297
BspANI GGCC 3 cut(s) 104, 327, 388
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 1 cut(s) 555
BspPI GGATC 2 cut(s) 209, 217
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 2 cut(s) 286, 379
BssECI CCNNGG 2 cut(s) 186, 417
BssHII GCGCGC 1 cut(s) 402
BssMI GATC 2 cut(s) 209, 214
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 501
Bst6I CTCTTC 2 cut(s) 128, 417
BstBAI YACGTR 1 cut(s) 7
BstC8I GCNNGC 3 cut(s) 386, 390, 404
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 3 cut(s) 250, 353, 511
BstFNI CGCG 1 cut(s) 404
BstHHI GCGC 2 cut(s) 404, 406
BstKTI GATC 2 cut(s) 212, 217
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 2 cut(s) 209, 214
BstMWI GCNNNNNNNGC 5 cut(s) 10, 146, 394, 403, 551
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 3 cut(s) 104, 327, 388
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 3 cut(s) 250, 353, 511
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 135, 386
Cac8I GCNNGC 3 cut(s) 386, 390, 404
CfoI GCGC 2 cut(s) 404, 406
Csp6I GTAC 1 cut(s) 502
CviAII CATG 5 cut(s) 67, 157, 166, 291, 530
CviQI GTAC 1 cut(s) 502
DpnI GATC 2 cut(s) 211, 216
DpnII GATC 2 cut(s) 209, 214
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 128, 417
EarI CTCTTC 2 cut(s) 128, 417
Eco130I CCWWGG 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 5 cut(s) 70, 160, 169, 294, 533
FaiI YATR 7 cut(s) 68, 158, 167, 292, 308, 531, 551
FaqI GGGAC 1 cut(s) 41
FatI CATG 5 cut(s) 66, 156, 165, 290, 529
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 3 cut(s) 257, 360, 498
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 2 cut(s) 231, 407
GlaI GCGC 2 cut(s) 403, 405
GluI GCNGC 1 cut(s) 228
GsaI CCCAGC 1 cut(s) 268
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 3 cut(s) 104, 327, 388
HapII CCGG 1 cut(s) 207
HhaI GCGC 2 cut(s) 404, 406
Hin1II CATG 5 cut(s) 70, 160, 169, 294, 533
Hin6I GCGC 2 cut(s) 402, 404
HinP1I GCGC 2 cut(s) 402, 404
HinfI GANTC 3 cut(s) 93, 251, 269
HpaII CCGG 1 cut(s) 207
HphI GGTGA 4 cut(s) 202, 311, 353, 486
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 82, 319
Hpy8I GTNNAC 1 cut(s) 414
Hpy99I CGWCG 2 cut(s) 455, 487
HpyAV CCTTC 2 cut(s) 69, 515
HpyCH4III ACNGT 1 cut(s) 501
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 146, 394, 403, 551
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 5 cut(s) 70, 160, 169, 294, 533
HspAI GCGC 2 cut(s) 402, 404
Kzo9I GATC 2 cut(s) 209, 214
LmnI GCTCC 2 cut(s) 288, 559
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 1 cut(s) 28
MaeI CTAG 2 cut(s) 231, 407
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 7, 190
MalI GATC 2 cut(s) 211, 216
MboI GATC 2 cut(s) 209, 214
MboII GAAGA 3 cut(s) 115, 434, 500
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 378
MlsI TGGCCA 1 cut(s) 327
MluCI AATT 1 cut(s) 238
MluNI TGGCCA 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 6 cut(s) 51, 61, 265, 295, 448, 489
Mox20I TGGCCA 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 360
MscI TGGCCA 1 cut(s) 327
MseI TTAA 2 cut(s) 35, 108
Msp20I TGGCCA 1 cut(s) 327
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 5 cut(s) 10, 146, 394, 403, 551
NdeII GATC 2 cut(s) 209, 214
NlaIII CATG 5 cut(s) 70, 160, 169, 294, 533
NlaIV GGNNCC 1 cut(s) 555
NmeAIII GCCGAG 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 190
PauI GCGCGC 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 3 cut(s) 93, 251, 269
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 1 cut(s) 229
Ppu21I YACGTR 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 222
PspFI CCCAGC 1 cut(s) 264
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 555
PsuI RGATCY 1 cut(s) 214
PteI GCGCGC 1 cut(s) 402
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SaqAI TTAA 2 cut(s) 35, 108
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 209, 214
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 378
SetI ASST 7 cut(s) 9, 232, 236, 285, 361, 445, 507
SfaNI GCATC 1 cut(s) 28
Sse9I AATT 1 cut(s) 238
SsiI CCGC 1 cut(s) 297
SspMI CTAG 2 cut(s) 231, 407
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 501
TaiI ACGT 1 cut(s) 9
TaqI TCGA 3 cut(s) 181, 372, 485
TasI AATT 1 cut(s) 238
TfiI GAWTC 3 cut(s) 93, 251, 269
Tru1I TTAA 2 cut(s) 35, 108
Tru9I TTAA 2 cut(s) 35, 108
TscAI CASTG 2 cut(s) 142, 386
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 3 cut(s) 154, 500, 518
TspGWI ACGGA 2 cut(s) 434, 471
TspRI CASTG 2 cut(s) 142, 386
Van91I CCANNNNNTGG 1 cut(s) 264
XapI RAATTY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 2 cut(s) 231, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.