FvH4_2g18700

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001106
Physical Location & Seq
Reverse (-)
15982578 .. 15983179
602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18700.t1

Sequence Viewer

Length: 447 bp
ATGGCTTCCACTTCTAAGCTTTTCCTTCTCACGGCTCTGCTTGTTCTGACCATGCCATTCATGGTCAGTAGTACTTCTCGACCTTTGAATTACCCAACGAGGAGCAAATCAAACCTTGCAGCCAGATTGAAATTGGATGAAGAATCATCAACCTGCTGGGAGTCTTTATTTCAGTTCCAGGCATGCAGTAAAGAGGTTGTGTTGTTCTTCCTCAATGGTGAGACTAGCTTAGGAGAAGGCTGCTGCAAAGCCCTTAGCACCATTGAGCACCTGTGTTGGCCAGCCTTGCTCGGCTCTCTAGGGCTTACCACGGAAGAGACTGATATATTAAAGGGTTACTGCGACGAAGCCGATCAAATCCAATCACCTCCGACATCGCCTTCACCACCATCTGTTCATCAGCCTACCGGAAAACTTGTTCCGGGTCTGGACAAGTTTATTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

149

Amino Acids

16.1

Weight (kDa)

5.1

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 51 - 115 6.1e-17 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 278
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 2 cut(s) 88, 130
AjnI CCWGG 1 cut(s) 177
AloI GAACNNNNNNTCC 2 cut(s) 402, 434
AluBI AGCT 2 cut(s) 19, 228
AluI AGCT 2 cut(s) 19, 228
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 215, 311
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 3 cut(s) 119, 240, 243
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 3 cut(s) 230, 357, 375
BalI TGGCCA 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 131, 227, 230
BccI CCATC 1 cut(s) 397
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 215, 311
BfaI CTAG 2 cut(s) 225, 299
BfuAI ACCTGC 1 cut(s) 161
BisI GCNGC 3 cut(s) 120, 241, 244
BlsI GCNGC 3 cut(s) 121, 242, 245
BmcAI AGTACT 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 179, 423
BmrFI CCNGG 2 cut(s) 179, 423
Bpu10I CCTNAGC 2 cut(s) 229, 254
BpuMI CCSGG 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 3 cut(s) 131, 227, 230
BseYI CCCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 2 cut(s) 408, 422
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 2 cut(s) 215, 311
BsnI GGCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 352
BspANI GGCC 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 184, 282
BstDEI CTNAG 3 cut(s) 15, 229, 254
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 2 cut(s) 215, 311
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 177, 421
BstV1I GCAGC 3 cut(s) 131, 227, 230
BsuRI GGCC 1 cut(s) 280
BtgI CCRYGG 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 360
BtsCI GGATG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 184, 282
Csp6I GTAC 1 cut(s) 72
CviAII CATG 3 cut(s) 52, 61, 183
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 3 cut(s) 15, 229, 254
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 177
FaeI CATG 3 cut(s) 55, 64, 186
FaiI YATR 4 cut(s) 53, 62, 184, 326
FatI CATG 3 cut(s) 51, 60, 182
Fnu4HI GCNGC 3 cut(s) 120, 241, 244
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 120, 241, 244
FspBI CTAG 2 cut(s) 225, 299
GluI GCNGC 3 cut(s) 120, 241, 244
GsaI CCCAGC 1 cut(s) 160
HaeIII GGCC 1 cut(s) 280
HapII CCGG 2 cut(s) 408, 422
Hin1II CATG 3 cut(s) 55, 64, 186
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 143, 161
HpaII CCGG 2 cut(s) 408, 422
HphI GGTGA 3 cut(s) 230, 357, 375
Hpy188I TCNGA 2 cut(s) 48, 372
Hpy188III TCNNGA 2 cut(s) 78, 428
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 3 cut(s) 35, 230, 390
HpyCH4V TGCA 3 cut(s) 119, 186, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 3 cut(s) 15, 229, 254
Hsp92II CATG 3 cut(s) 55, 64, 186
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 1 cut(s) 102
Lsp1109I GCAGC 3 cut(s) 131, 227, 230
MaeI CTAG 2 cut(s) 225, 299
MaeIII GTNAC 1 cut(s) 335
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 3 cut(s) 152, 199, 326
MhlI GDGCHC 1 cut(s) 270
MlsI TGGCCA 1 cut(s) 280
MluCI AATT 2 cut(s) 88, 131
MluNI TGGCCA 1 cut(s) 280
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 4 cut(s) 93, 187, 221, 378
Mox20I TGGCCA 1 cut(s) 280
MscI TGGCCA 1 cut(s) 280
MseI TTAA 1 cut(s) 329
Msp20I TGGCCA 1 cut(s) 280
MspI CCGG 2 cut(s) 408, 422
MspR9I CCNGG 2 cut(s) 179, 423
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 286
NciI CCSGG 1 cut(s) 423
NdeII GATC 1 cut(s) 352
NlaIII CATG 3 cut(s) 55, 64, 186
NmeAIII GCCGAG 1 cut(s) 270
NspI RCATGY 1 cut(s) 186
PaeI GCATGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 121, 242, 245
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 1 cut(s) 177
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 3 cut(s) 120, 241, 244
Sau3AI GATC 1 cut(s) 352
ScaI AGTACT 1 cut(s) 73
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 179, 423
SduI GDGCHC 1 cut(s) 270
SetI ASST 8 cut(s) 21, 85, 117, 155, 198, 230, 273, 370
SphI GCATGC 1 cut(s) 186
Sse9I AATT 2 cut(s) 88, 131
SspMI CTAG 2 cut(s) 225, 299
StyD4I CCNGG 2 cut(s) 177, 421
TaqI TCGA 1 cut(s) 79
TasI AATT 2 cut(s) 88, 131
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TseI GCWGC 3 cut(s) 119, 240, 243
TspDTI ATGAA 3 cut(s) 49, 153, 386
TspGWI ACGGA 2 cut(s) 326, 432
XceI RCATGY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 2 cut(s) 58, 130
XspI CTAG 2 cut(s) 225, 299
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.