Prupe.8G031900_v2.0.a1

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001106
Physical Location & Seq
Forward (+)
3014642 .. 3015348
707 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G031900.1

Sequence Viewer

Length: 459 bp
ATGGCAGCTTACACAACTTTCAAGCTCTTTCTTCTCACAGCTGTTCTAACCTTGACTATGCCATTCTTAGCCACAAGTGCTCGACCTTTGAATCCTAACCTAATTCGGTCGAACCCGAACCTCGCAGCCAGGTTGAATTTGGGTGAAGAATCTTCCAACTGTTGGGACTCTTTGTTTCAACTCCAGGCATGTTCTGGTGAGGTTGTCATGTTTTTTCTAAATGGTGAGACTTACTTGGGTCACAGCTGCTGTGAAGCCATTCGGACCATTGAGCATCAGTGTTGGCCTGCCTTACTTGGCACGCTAGGGTTTACCGCGGAAGAGACTGATGTACTCAAGGGTTACTGTGATGAAGCCGATCATGTCAAATCCCCGCCGGCAAATCCACCATCACCACCTTCAATTCATGATCCTATAAATGTAAAAGTTGTTCCTAATTTGGAGAAGTTGGTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

153

Amino Acids

16.63

Weight (kDa)

5.06

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 162
AccII CGCG 1 cut(s) 317
AciI CCGC 3 cut(s) 315, 317, 374
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 1 cut(s) 136
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 5 cut(s) 22, 91, 136, 179, 402
AjnI CCWGG 2 cut(s) 128, 183
AluBI AGCT 4 cut(s) 8, 25, 41, 246
AluI AGCT 4 cut(s) 8, 25, 41, 246
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 2 cut(s) 221, 317
AlwI GGATC 1 cut(s) 404
AlwNI CAGNNNCTG 1 cut(s) 249
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 3 cut(s) 5, 125, 246
ApoI RAATTY 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 264, 451
AsuHPI GGTGA 4 cut(s) 155, 209, 236, 384
AvaII GGWCC 2 cut(s) 264, 451
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 17, 137, 233
BccI CCATC 1 cut(s) 397
BciT130I CCWGG 2 cut(s) 130, 185
BcoDI GTCTC 2 cut(s) 221, 317
BfaI CTAG 1 cut(s) 305
BisI GCNGC 3 cut(s) 6, 126, 247
BlsI GCNGC 3 cut(s) 7, 127, 248
Bme1390I CCNGG 2 cut(s) 130, 185
Bme18I GGWCC 2 cut(s) 264, 451
BmgT120I GGNCC 2 cut(s) 264, 451
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 2 cut(s) 130, 185
BmsI GCATC 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse118I RCCGGY 1 cut(s) 376
BseBI CCWGG 2 cut(s) 130, 185
BseDI CCNNGG 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 162
BseXI GCAGC 3 cut(s) 17, 137, 233
Bsh1236I CGCG 1 cut(s) 317
Bsh1285I CGRYCG 1 cut(s) 110
BshFI GGCC 1 cut(s) 286
BsiEI CGRYCG 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 377
BslFI GGGAC 2 cut(s) 179, 437
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 221, 317
BsmFI GGGAC 2 cut(s) 179, 437
BsnI GGCC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 2 cut(s) 358, 409
BspACI CCGC 3 cut(s) 315, 317, 374
BspANI GGCC 1 cut(s) 286
BspFNI CGCG 1 cut(s) 317
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 453
BspPI GGATC 1 cut(s) 404
BsrFI RCCGGY 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 2 cut(s) 358, 409
Bst2UI CCWGG 2 cut(s) 130, 185
Bst4CI ACNGT 2 cut(s) 161, 347
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 3 cut(s) 288, 302, 378
BstDEI CTNAG 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 315
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 2 cut(s) 361, 412
BstMAI GTCTC 2 cut(s) 221, 317
BstMBI GATC 2 cut(s) 358, 409
BstMCI CGRYCG 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 2 cut(s) 130, 185
BstNSI RCATGY 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 128, 183
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 3 cut(s) 17, 137, 233
BsuRI GGCC 1 cut(s) 286
BtgI CCRYGG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 284
Cac8I GCNNGC 3 cut(s) 288, 302, 378
CaiI CAGNNNCTG 1 cut(s) 249
CciI TCATGA 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 264, 451
Cfr42I CCGCGG 1 cut(s) 318
Csp6I GTAC 1 cut(s) 332
CviAII CATG 4 cut(s) 189, 208, 362, 407
CviJI RGCY 9 cut(s) 8, 25, 41, 71, 128, 246, 257, 286, 356
CviKI_1 RGCY 9 cut(s) 8, 25, 41, 71, 128, 246, 257, 286, 356
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 1 cut(s) 67
DpnI GATC 2 cut(s) 360, 411
DpnII GATC 2 cut(s) 358, 409
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 264, 451
EcoRII CCWGG 2 cut(s) 128, 183
FaeI CATG 4 cut(s) 192, 211, 365, 410
FaiI YATR 6 cut(s) 59, 190, 209, 363, 408, 416
FaqI GGGAC 2 cut(s) 179, 437
FatI CATG 4 cut(s) 188, 207, 361, 406
FauI CCCGC 1 cut(s) 381
Fnu4HI GCNGC 3 cut(s) 6, 126, 247
Fsp4HI GCNGC 3 cut(s) 6, 126, 247
FspBI CTAG 1 cut(s) 305
GluI GCNGC 3 cut(s) 6, 126, 247
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 286
HapII CCGG 1 cut(s) 377
Hin1II CATG 4 cut(s) 192, 211, 365, 410
HinfI GANTC 3 cut(s) 91, 149, 167
HpaII CCGG 1 cut(s) 377
HphI GGTGA 4 cut(s) 155, 209, 236, 384
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 1 cut(s) 408
HpyCH4III ACNGT 2 cut(s) 161, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 4 cut(s) 192, 211, 365, 410
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
KspI CCGCGG 1 cut(s) 318
Kzo9I GATC 2 cut(s) 358, 409
LpnPI CCDG 7 cut(s) 115, 142, 170, 180, 197, 300, 390
Lsp1109I GCAGC 3 cut(s) 17, 137, 233
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 239, 341
MalI GATC 2 cut(s) 360, 411
MboI GATC 2 cut(s) 358, 409
MboII GAAGA 4 cut(s) 23, 144, 158, 332
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 4 cut(s) 102, 136, 402, 436
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 2 cut(s) 131, 193
MroNI GCCGGC 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 258
MspA1I CMGCKG 3 cut(s) 41, 246, 317
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 2 cut(s) 130, 185
MvaI CCWGG 2 cut(s) 130, 185
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 77
NaeI GCCGGC 1 cut(s) 378
NdeII GATC 2 cut(s) 358, 409
NgoMIV GCCGGC 1 cut(s) 376
NlaIII CATG 4 cut(s) 192, 211, 365, 410
NlaIV GGNNCC 1 cut(s) 453
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 192
PagI TCATGA 1 cut(s) 406
PdiI GCCGGC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 91, 149
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 3 cut(s) 7, 127, 248
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp6I CCWGG 2 cut(s) 128, 183
PspGI CCWGG 2 cut(s) 128, 183
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 2 cut(s) 264, 451
PsrI GAACNNNNNNTAC 2 cut(s) 414, 446
PstNI CAGNNNCTG 1 cut(s) 249
PvuII CAGCTG 2 cut(s) 41, 246
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SacII CCGCGG 1 cut(s) 318
SatI GCNGC 3 cut(s) 6, 126, 247
Sau3AI GATC 2 cut(s) 358, 409
Sau96I GGNCC 2 cut(s) 264, 451
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 130, 185
SduI GDGCHC 1 cut(s) 82
SfaNI GCATC 1 cut(s) 283
Sfr303I CCGCGG 1 cut(s) 318
SgrBI CCGCGG 1 cut(s) 318
SinI GGWCC 2 cut(s) 264, 451
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 4 cut(s) 102, 136, 402, 436
SsiI CCGC 3 cut(s) 315, 317, 374
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 128, 183
TaaI ACNGT 2 cut(s) 161, 347
TaqI TCGA 2 cut(s) 82, 110
TaqII GACCGA 1 cut(s) 96
TasI AATT 4 cut(s) 102, 136, 402, 436
TatI WGTACW 1 cut(s) 331
TfiI GAWTC 2 cut(s) 91, 149
TscAI CASTG 1 cut(s) 284
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 3 cut(s) 5, 125, 246
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 366, 395
TspRI CASTG 1 cut(s) 284
Van91I CCANNNNNTGG 1 cut(s) 162
VpaK11BI GGWCC 2 cut(s) 264, 451
XapI RAATTY 1 cut(s) 136
XceI RCATGY 1 cut(s) 192
XcmI CCANNNNNNNNNTGG 2 cut(s) 136, 191
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.