Rh6BG278800

Egg cell-secreted protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001106
Physical Location & Seq
Forward (+)
50081297 .. 50082518
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG278800.1

Sequence Viewer

Length: 423 bp
ATGGCCGACACTTCCAAGCTTTTTCTTCTCACGGCTCTTCTAGCTCTGACTATGCCATTCATGGCTAGTAGCTTTCGGCCTTTGAATAACCGAATTGGCTCTAAATCGAATCTTGCAGCCAGGTTGAAATTGGTTGGAAAATCATCAAATTGCTGGGACTCATTGATACAGTTGCAGGCATGTAGTAGTCAGGTAGTTCTGTTCTTTCTCAATGGTGAGACTTACTTGGGACATGGTTGCTGCATAGCCATTCGGACCATTGAGCACCAGTGTTGGCCTGCCTTGCTTGGCTCCCAGGGTTTTCCGCAGAAGAGGTTGACATTCTCAAAGGTTTTTGCGATCAGGCCATTCAACTCGAAATCTCACCGCCGCCACGACCACCATCCATTGATGAGGCTACTGGAAAATTTGTTCCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

140

Amino Acids

15.8

Weight (kDa)

10.06

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 50 - 106 1.3e-14 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 305, 367, 370
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 406
AgsI TTSAA 3 cut(s) 85, 127, 352
AjnI CCWGG 2 cut(s) 119, 294
AloI GAACNNNNNNTCC 1 cut(s) 395
AluBI AGCT 3 cut(s) 19, 44, 72
AluI AGCT 3 cut(s) 19, 44, 72
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 212
AoxI GGCC 4 cut(s) 3, 77, 275, 344
ApeKI GCWGC 2 cut(s) 116, 240
ApoI RAATTY 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 227, 356
AvaII GGWCC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 128, 227
BccI CCATC 1 cut(s) 390
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 2 cut(s) 121, 296
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 2 cut(s) 41, 66
BisI GCNGC 3 cut(s) 117, 241, 370
BlsI GCNGC 3 cut(s) 118, 242, 371
Bme1390I CCNGG 2 cut(s) 121, 296
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 2 cut(s) 121, 296
BsaJI CCNNGG 2 cut(s) 294, 295
Bse1I ACTGG 2 cut(s) 268, 405
BseBI CCWGG 2 cut(s) 121, 296
BseDI CCNNGG 2 cut(s) 294, 295
BseGI GGATG 1 cut(s) 382
BseNI ACTGG 2 cut(s) 268, 405
BseXI GCAGC 2 cut(s) 128, 227
BseYI CCCAGC 1 cut(s) 153
BshFI GGCC 4 cut(s) 5, 79, 277, 346
BsiHKAI GWGCWC 1 cut(s) 267
BslFI GGGAC 2 cut(s) 170, 243
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 170, 243
BsnI GGCC 4 cut(s) 5, 79, 277, 346
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 3 cut(s) 305, 367, 370
BspANI GGCC 4 cut(s) 5, 79, 277, 346
BspLI GGNNCC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 42
BsrI ACTGG 2 cut(s) 268, 405
BssECI CCNNGG 2 cut(s) 294, 295
BssMI GATC 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 121, 296
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 42, 305
BstC8I GCNNGC 2 cut(s) 177, 279
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 1 cut(s) 339
BstMWI GCNNNNNNNGC 2 cut(s) 41, 283
BstNI CCWGG 2 cut(s) 121, 296
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 2 cut(s) 119, 294
BstV1I GCAGC 2 cut(s) 128, 227
BsuRI GGCC 4 cut(s) 5, 79, 277, 346
BtsCI GGATG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 2 cut(s) 177, 279
Cfr13I GGNCC 1 cut(s) 255
CviAII CATG 3 cut(s) 61, 180, 233
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 42, 305
EarI CTCTTC 2 cut(s) 42, 305
Eco47I GGWCC 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 119, 294
FaeI CATG 3 cut(s) 64, 183, 236
FaiI YATR 6 cut(s) 53, 62, 181, 234, 245, 421
FaqI GGGAC 2 cut(s) 170, 243
FatI CATG 3 cut(s) 60, 179, 232
Fnu4HI GCNGC 3 cut(s) 117, 241, 370
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 3 cut(s) 117, 241, 370
FspBI CTAG 2 cut(s) 41, 66
GluI GCNGC 3 cut(s) 117, 241, 370
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 4 cut(s) 5, 79, 277, 346
Hin1II CATG 3 cut(s) 64, 183, 236
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 109, 158
HphI GGTGA 2 cut(s) 227, 356
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 2 cut(s) 48, 255
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 1 cut(s) 318
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 116, 175, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 283
Hsp92II CATG 3 cut(s) 64, 183, 236
Kzo9I GATC 1 cut(s) 339
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 2 cut(s) 128, 227
MaeI CTAG 2 cut(s) 41, 66
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 3 cut(s) 17, 29, 322
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 4 cut(s) 93, 128, 148, 406
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 2 cut(s) 306, 387
MspR9I CCNGG 2 cut(s) 121, 296
MvaI CCWGG 2 cut(s) 121, 296
MwoI GCNNNNNNNGC 2 cut(s) 41, 283
NdeII GATC 1 cut(s) 339
NlaIII CATG 3 cut(s) 64, 183, 236
NlaIV GGNNCC 1 cut(s) 292
NspI RCATGY 1 cut(s) 183
PasI CCCWGGG 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 118, 242, 371
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Psp6I CCWGG 2 cut(s) 119, 294
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 2 cut(s) 119, 294
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 42
SatI GCNGC 3 cut(s) 117, 241, 370
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 121, 296
SduI GDGCHC 1 cut(s) 267
SetI ASST 7 cut(s) 21, 46, 74, 125, 195, 317, 333
SinI GGWCC 1 cut(s) 255
Sse9I AATT 4 cut(s) 93, 128, 148, 406
SsiI CCGC 3 cut(s) 305, 367, 370
SspMI CTAG 2 cut(s) 41, 66
StyD4I CCNGG 2 cut(s) 119, 294
TaaI ACNGT 1 cut(s) 171
TaqI TCGA 2 cut(s) 107, 356
TasI AATT 4 cut(s) 93, 128, 148, 406
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 1 cut(s) 275
TseI GCWGC 2 cut(s) 116, 240
TspDTI ATGAA 1 cut(s) 49
TspRI CASTG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 1 cut(s) 406
XceI RCATGY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XspI CTAG 2 cut(s) 41, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.